RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TBC1D21Q8IYX1 336 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 RAD51AP1Q96B01 352 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 NSRP1Q9H0G5 558 aaKnown RBP19.35■□□□□ 0.69
CLN3-205ENST00000359984 ATG10Q9H0Y0 220 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 ZBTB26Q9HCK0 441 aa19.35■□□□□ 0.69
CLN3-205ENST00000359984 PRR5-ARHGAP8B1AHC4 643 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 PPP6CO00743 305 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 UBFD1O14562 309 aaKnown RBP19.34■□□□□ 0.69
CLN3-205ENST00000359984 CCNT2O60583 730 aaKnown RBP19.34■□□□□ 0.69
CLN3-205ENST00000359984 STK16O75716 305 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 GNSP15586 552 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 MPSTP25325 297 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 IMPA1P29218 277 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 SLC6A12P48065 614 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 METTL2BQ6P1Q9 378 aaKnown RBP19.34■□□□□ 0.69
CLN3-205ENST00000359984 AGTRAPQ6RW13 159 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 TAF8Q7Z7C8 310 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 TRPC4APQ8TEL6 797 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 ATL1Q8WXF7 558 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 ELAC2Q9BQ52 826 aaKnown RBP19.34■□□□□ 0.69
CLN3-205ENST00000359984 HGH1Q9BTY7 390 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 ILKAPQ9H0C8 392 aaPredicted RBP19.34■□□□□ 0.69
CLN3-205ENST00000359984 PNPOQ9NVS9 261 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 TAAR2Q9P1P5 351 aa19.34■□□□□ 0.69
CLN3-205ENST00000359984 TDRKHQ9Y2W6 561 aaKnown RBP19.34■□□□□ 0.69
CLN3-205ENST00000359984 MTHFD1P11586 935 aaKnown RBP19.33■□□□□ 0.69
CLN3-205ENST00000359984 F3P13726 295 aa19.33■□□□□ 0.69
CLN3-205ENST00000359984 NAA20P61599 178 aa19.33■□□□□ 0.69
CLN3-205ENST00000359984 GALNT1Q10472 559 aaPredicted RBP19.33■□□□□ 0.69
CLN3-205ENST00000359984 SF3A3Q12874 501 aaKnown RBP eCLIP19.33■□□□□ 0.69
CLN3-205ENST00000359984 PTCHD3Q3KNS1 767 aa19.33■□□□□ 0.69
CLN3-205ENST00000359984 TEX9Q8N6V9 391 aa19.33■□□□□ 0.69
CLN3-205ENST00000359984 ZNF781Q8N8C0 355 aa19.33■□□□□ 0.69
CLN3-205ENST00000359984 ZNF480Q8WV37 535 aa19.33■□□□□ 0.69
CLN3-205ENST00000359984 PIGKQ92643 395 aa19.33■□□□□ 0.69
CLN3-205ENST00000359984 PYCR2Q96C36 320 aa19.33■□□□□ 0.69
CLN3-205ENST00000359984 THOC1Q96FV9 657 aaKnown RBP19.33■□□□□ 0.69
CLN3-205ENST00000359984 SEMA4BQ9NPR2 832 aaPredicted RBP19.33■□□□□ 0.69
CLN3-205ENST00000359984 OPTCQ9UBM4 332 aa19.33■□□□□ 0.69
CLN3-205ENST00000359984 MARCOQ9UEW3 520 aaPredicted RBP19.33■□□□□ 0.69
CLN3-205ENST00000359984 PLAGL1Q9UM63 463 aa19.33■□□□□ 0.69
CLN3-205ENST00000359984 RAP2CQ9Y3L5 183 aa19.33■□□□□ 0.69
CLN3-205ENST00000359984 PRAMEF33A0A0G2JMD5 474 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 K7EPI3 171 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 KITP10721 976 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 PRKAA1Q13131 559 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 GTF2H2Q13888 395 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 GTF2H2CQ6P1K8 395 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 GOLGA7Q7Z5G4 137 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 MVB12BQ9H7P6 319 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 EML4Q9HC35 981 aaKnown RBP19.33■□□□□ 0.68
CLN3-205ENST00000359984 TNFRSF12AQ9NP84 129 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 ZNF624Q9P2J8 865 aaPredicted RBP19.33■□□□□ 0.68
CLN3-205ENST00000359984 SUSD2Q9UGT4 822 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 ZDHHC2Q9UIJ5 367 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 HAO1Q9UJM8 370 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 HEBP2Q9Y5Z4 205 aa19.33■□□□□ 0.68
CLN3-205ENST00000359984 TRBV23OR9-2A0A075B6M9 112 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 SNUPNO95149 360 aaKnown RBP19.32■□□□□ 0.68
CLN3-205ENST00000359984 TGDSO95455 350 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 SH3BP2P78314 561 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 BNC1Q01954 994 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 LCP2Q13094 533 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 NAE1Q13564 534 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 SIM2Q14190 667 aaPredicted RBP19.32■□□□□ 0.68
CLN3-205ENST00000359984 KRT33BQ14525 404 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 KIF19Q2TAC6 998 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 CUZD1Q86UP6 607 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 LMNTD1Q8N9Z9 388 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 PPFIBP2Q8ND30 876 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 AGR3Q8TD06 166 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 GRAMD1AQ96CP6 724 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 CAMK1GQ96NX5 476 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 IL17FQ96PD4 163 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 NRTNQ99748 197 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 SLC32A1Q9H598 525 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.32■□□□□ 0.68
CLN3-205ENST00000359984 PCDHGA2Q9Y5H1 932 aa19.32■□□□□ 0.68
CLN3-205ENST00000359984 TNRC6BQ9UPQ9 1833 aaKnown RBP19.32■□□□□ 0.68
CLN3-205ENST00000359984 A0A1B0GTL3 188 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 EBAG9O00559 213 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 WDR47O94967 919 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 CTSKP43235 329 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 IYDQ6PHW0 289 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 LRRC70Q7Z2Q7 622 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 PIGWQ7Z7B1 504 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 SYT12Q8IV01 421 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 KLHDC8AQ8IYD2 350 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 OR56A3Q8NH54 315 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 PIWIL2Q8TC59 973 aaKnown RBP19.31■□□□□ 0.68
CLN3-205ENST00000359984 LMX1AQ8TE12 382 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 NOL11Q9H8H0 719 aaKnown RBP19.31■□□□□ 0.68
CLN3-205ENST00000359984 NPHS2Q9NP85 383 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 SPASTQ9UBP0 616 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 POLG2Q9UHN1 485 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 SLC22A14Q9Y267 594 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 SNX11Q9Y5W9 270 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 MLYCDO95822 493 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 SLC19A1P41440 591 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 RPL14P50914 215 aaKnown RBP19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms