RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 METTL21EPA6NDL7 271 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 CHRNA4P43681 627 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 ARCN1P48444 511 aaKnown RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 GSK3BP49841 420 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 CRISP3P54108 245 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 CSTF1Q05048 431 aaKnown RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 TUBA3CQ13748 450 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 SCARB2Q14108 478 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 SMARCD3Q6STE5 483 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 KLHL36Q8N4N3 616 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 ENDOVQ8N8Q3 282 aaKnown RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 TOR3AQ9H497 397 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 ANKHQ9HCJ1 492 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 COL20A1Q9P218 1284 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TBC1D3DA0A087WVF3 549 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TBC1D3IA0A087WXS9 549 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TBC1D3EA0A087X179 549 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TBC1D3KA0A087X1G2 549 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TBC1D3FA6NER0 549 aaPredicted RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 TBC1D3LB9A6J9 549 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TBC1D3HP0C7X1 549 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 LMO2P25791 158 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 PTGS2P35354 604 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 GRIA1P42261 906 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 NDUFA9Q16795 377 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TBC1D3GQ6DHY5 549 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TBC1D3CQ6IPX1 549 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 PAQR3Q6TCH7 311 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TMEM126BQ8IUX1 230 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TBC1D3Q8IZP1 549 aaPredicted RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 LGI4Q8N135 537 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 POF1BQ8WVV4 589 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 RC3H2Q9HBD1 1191 aaKnown RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 POLR3BQ9NW08 1133 aaPredicted RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 THUMPD1Q9NXG2 353 aaKnown RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 CD84Q9UIB8 345 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 ZDHHC2Q9UIJ5 367 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 FKBP7Q9Y680 259 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TEX264Q9Y6I9 313 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 SLIT3O75094 1523 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 DLX3O60479 287 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 CTNNB1P35222 781 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 XKP51811 444 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 RFTN1Q14699 578 aaPredicted RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 FAAH2Q6GMR7 532 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 LBX2Q6XYB7 198 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 IFT27Q9BW83 186 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 ZBTB26Q9HCK0 441 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 MLXQ9UH92 298 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 PCDHGB7Q9Y5F8 929 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 OR6C70A6NIJ9 312 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 GLUD1P00367 558 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 TSPAN5P62079 268 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 ZNF234Q14588 700 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 RBM20Q5T481 1227 aaKnown RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 NCBP2-AS2Q69YL0 99 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 PAMR1Q6UXH9 720 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 CIR1Q86X95 450 aaPredicted RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 DNAJA4Q8WW22 397 aaPredicted RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 C12orf43Q96C57 262 aaKnown RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 CHIAQ9BZP6 476 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 FBXW2Q9UKT8 454 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 ARL5AQ9Y689 179 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 LOC100130705A0A1B0GUX0 176 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 CLIC1O00299 241 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 HMGN1P05114 100 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 EIPR1Q53HC9 387 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 CRB2Q5IJ48 1285 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 DEC1Q9P2X7 70 aa14.56□□□□□ -0.08
CHD4-201ENST00000357008 FCF1Q9Y324 198 aaKnown RBP14.56□□□□□ -0.08
CHD4-201ENST00000357008 A0A1W2PRB8 838 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 PI15O43692 258 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 CLPXO76031 633 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 IL7RP16871 459 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 VARSP26640 1264 aaKnown RBP14.55□□□□□ -0.08
CHD4-201ENST00000357008 EIF5AP63241 154 aaKnown RBP14.55□□□□□ -0.08
CHD4-201ENST00000357008 TXNL4AP83876 142 aaKnown RBP14.55□□□□□ -0.08
CHD4-201ENST00000357008 NFKB2Q00653 900 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 SPATS1Q496A3 300 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 NIPAL1Q6NVV3 410 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 POMZP3Q6PJE2 187 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 CHST9Q7L1S5 443 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 ZBTB8BQ8NAP8 495 aaPredicted RBP14.55□□□□□ -0.08
CHD4-201ENST00000357008 PLD4Q96BZ4 506 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 HSPBAP1Q96EW2 488 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 CNDP2Q96KP4 475 aaKnown RBP14.55□□□□□ -0.08
CHD4-201ENST00000357008 ZSWIM3Q96MP5 696 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 IFT46Q9NQC8 304 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 EVA1BQ9NVM1 165 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 OSER1Q9NX31 292 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 FLRT1Q9NZU1 646 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 PADI3Q9ULW8 664 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 MGAT4AQ9UM21 535 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 J3QRK9 145 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 SYN3O14994 580 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 RBMXL2O75526 392 aaKnown RBP14.55□□□□□ -0.08
CHD4-201ENST00000357008 SLC35G6P0C7Q6 338 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 STXBP1P61764 594 aaKnown RBP14.55□□□□□ -0.08
CHD4-201ENST00000357008 TIFABQ6ZNK6 161 aa14.55□□□□□ -0.08
CHD4-201ENST00000357008 CLEC4CQ8WTT0 213 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms