RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 SLCO1B3Q9NPD5 702 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 NDRG2Q9UN36 371 aaKnown RBP6.35□□□□□ -1.39
UPF2-201ENST00000356352 PXDNQ92626 1479 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 KIF1AQ12756 1690 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 A0A0J9YVX5 310 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 KANTRA0A1W2PQU2 76 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 ADAMTS3O15072 1205 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 MID1O15344 667 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 LRCH4O75427 683 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 OR4F21O95013 312 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 CSNK2A2P19784 350 aaPredicted RBP6.35□□□□□ -1.39
UPF2-201ENST00000356352 PRPS1L1P21108 318 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 AHCYP23526 432 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 CLCNKBP51801 687 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 CDKL1Q00532 357 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 PLGLB1Q02325 96 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 LRRC32Q14392 662 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 ARL13AQ5H913 290 aaPredicted RBP6.35□□□□□ -1.39
UPF2-201ENST00000356352 VARS2Q5ST30 1063 aaKnown RBP6.35□□□□□ -1.39
UPF2-201ENST00000356352 LPCAT4Q643R3 524 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 EIF5AL1Q6IS14 154 aaKnown RBP6.35□□□□□ -1.39
UPF2-201ENST00000356352 KCTD8Q6ZWB6 473 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 ECHDC2Q86YB7 292 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 PARP8Q8N3A8 854 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 SLC44A3Q8N4M1 653 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 OR4C15Q8NGM1 316 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 OVCA2Q8WZ82 227 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 KAT2AQ92830 837 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 PCDHB18PQ96TA0 734 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 EBPLQ9BY08 206 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 B3GNT5Q9BYG0 378 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 TMED5Q9Y3A6 229 aa6.35□□□□□ -1.39
UPF2-201ENST00000356352 WNT9AO14904 365 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 PIP5K1BO14986 540 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 EPHB6O15197 1021 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 PCDH7O60245 1069 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 CDH1P12830 882 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 GADD45AP24522 165 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 SCNN1AP37088 669 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 EEFSECP57772 596 aaKnown RBP6.34□□□□□ -1.39
UPF2-201ENST00000356352 DAOAP59103 153 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 MC1RQ01726 317 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 CBLBQ13191 982 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 SPATS1Q496A3 300 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 CRTC2Q53ET0 693 aaPredicted RBP6.34□□□□□ -1.39
UPF2-201ENST00000356352 EGFLAMQ63HQ2 1017 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 RBM15BQ8NDT2 890 aaKnown RBP6.34□□□□□ -1.39
UPF2-201ENST00000356352 OR52J3Q8NH60 311 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 NCSTNQ92542 709 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 HTRA1Q92743 480 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 GTPBP3Q969Y2 492 aaKnown RBP6.34□□□□□ -1.39
UPF2-201ENST00000356352 LRRC46Q96FV0 321 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 CMTM7Q96FZ5 175 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 PCED1BQ96HM7 432 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 DHRS1Q96LJ7 313 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 SLC29A3Q9BZD2 475 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 GDAP2Q9NXN4 497 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 ZDHHC3Q9NYG2 299 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 PLK2Q9NYY3 685 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 FKBPLQ9UIM3 349 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 FZD1Q9UP38 647 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 TESMINQ9Y4I5 508 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 CLCA3PQ9Y6N3 262 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 BCL9LQ86UU0 1499 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 A0A075B6Q4 140 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 A0A1W2PRB8 838 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 FABP12A6NFH5 140 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 CLDN25C9JDP6 229 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 ZNF670-ZNF695F2Z2N8 137 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 H3BUI4 141 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 FFAR2O15552 330 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 CPNE3O75131 537 aaKnown RBP6.34□□□□□ -1.39
UPF2-201ENST00000356352 CLPXO76031 633 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 RCBTB2O95199 551 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 OR4Q2P0C623 313 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 WASP42768 502 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 MECP2P51608 486 aaKnown RBP6.34□□□□□ -1.39
UPF2-201ENST00000356352 PGDP52209 483 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 ERVK-8P63133 956 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 TXNL4AP83876 142 aaKnown RBP6.34□□□□□ -1.39
UPF2-201ENST00000356352 GHRHRQ02643 423 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 TARDBPQ13148 414 aaKnown RBP eCLIP6.34□□□□□ -1.396e-7■■□□□ 13.3
UPF2-201ENST00000356352 IL17AQ16552 155 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 EOGTQ5NDL2 527 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 IDNKQ5T6J7 187 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 GRHL2Q6ISB3 625 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 INO80EQ8NBZ0 244 aaPredicted RBP6.34□□□□□ -1.39
UPF2-201ENST00000356352 KREMEN2Q8NCW0 462 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 NTAN1Q96AB6 310 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 YTHDF1Q9BYJ9 559 aaKnown RBP6.34□□□□□ -1.39
UPF2-201ENST00000356352 NMUR2Q9GZQ4 415 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 TPK1Q9H3S4 243 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 USP29Q9HBJ7 922 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 MAGEE1Q9HCI5 957 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 ALKBH4Q9NXW9 302 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 CNTN3Q9P232 1028 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 EIF2B4Q9UI10 523 aaKnown RBP6.34□□□□□ -1.39
UPF2-201ENST00000356352 PCDHGA10Q9Y5H3 936 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 SLIT3O75094 1523 aa6.34□□□□□ -1.39
UPF2-201ENST00000356352 A0A1B0GVC2 190 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms