RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 GPR141Q7Z602 305 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 VRK3Q8IV63 474 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 SLC12A9Q9BXP2 914 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 UGT2B28Q9BY64 529 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 SLC6A13Q9NSD5 602 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 PCDH10Q9P2E7 1040 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 LIMD1Q9UGP4 676 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 TMPRSS11EQ9UL52 423 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 INVSQ9Y283 1065 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 DLGAP4Q9Y2H0 992 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 MAGED1Q9Y5V3 778 aaPredicted RBP21.26■□□□□ 0.99
SHMT1-202ENST00000352886 ELOVL7A1L3X0 281 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 GRM6O15303 877 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 POP4O95707 220 aaKnown RBP21.26■□□□□ 0.99
SHMT1-202ENST00000352886 ALBP02768 609 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 CCL5P13501 91 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 NEK2P51955 445 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 RPS14P62263 151 aaKnown RBP21.26■□□□□ 0.99
SHMT1-202ENST00000352886 ESRRGP62508 458 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 RUNDC3AQ59EK9 446 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 Q6ZVU0 165 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 LRRC70Q7Z2Q7 622 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 TMEM25Q86YD3 366 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 PHACTR4Q8IZ21 702 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 CHST14Q8NCH0 376 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 SLC22A17Q8WUG5 538 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 PYCR2Q96C36 320 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 SH3GL1Q99961 368 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 BEGAINQ9BUH8 593 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 ZBP1Q9H171 429 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 ELOVL6Q9H5J4 265 aa21.26■□□□□ 0.99
SHMT1-202ENST00000352886 LIN28AQ9H9Z2 209 aaKnown RBP21.26■□□□□ 0.99
SHMT1-202ENST00000352886 EIF3FO00303 357 aaPredicted RBP21.25■□□□□ 0.99
SHMT1-202ENST00000352886 C8GP07360 202 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 HIST1H2AGP0C0S8 130 aaPredicted RBP21.25■□□□□ 0.99
SHMT1-202ENST00000352886 TCF3P15923 654 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 HIST1H2ADP20671 130 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 ZIK1Q3SY52 487 aaPredicted RBP21.25■□□□□ 0.99
SHMT1-202ENST00000352886 LEMD2Q8NC56 503 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 ADAMTS16Q8TE57 1224 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 HIST1H2AHQ96KK5 128 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 YME1L1Q96TA2 773 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 HIST1H2AJQ99878 128 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 H2AFJQ9BTM1 129 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 IRAK4Q9NWZ3 460 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 PDE4DIPQ5VU43 2346 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 KRT87PA6NCN2 255 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 MTX2O75431 263 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 FGF18O76093 207 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 ALDH3A2P51648 485 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 PHC1P78364 1004 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 CREMQ03060 361 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 NKG7Q16617 165 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 PTCHD3Q3KNS1 767 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 GCNT7Q6ZNI0 430 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 STK32CQ86UX6 486 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 CLEC4FQ8N1N0 589 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 ASB11Q8WXH4 323 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 ZNF641Q96N77 438 aaPredicted RBP21.25■□□□□ 0.99
SHMT1-202ENST00000352886 SNX6Q9UNH7 406 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 PCDHB14Q9Y5E9 798 aa21.25■□□□□ 0.99
SHMT1-202ENST00000352886 CXorf51AA0A1B0GTR3 108 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 NEDD8-MDP1E9PL57 170 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 NUAK1O60285 661 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 ARHGEF15O94989 841 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 PPM1AP35813 382 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 MNX1P50219 401 aaPredicted RBP21.24■□□□□ 0.99
SHMT1-202ENST00000352886 WDR5P61964 334 aaKnown RBP21.24■□□□□ 0.99
SHMT1-202ENST00000352886 DAG1Q14118 895 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 GBX1Q14549 363 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 ZDHHC20Q5W0Z9 365 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 ELMOD1Q8N336 334 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 TCAIMQ8N3R3 496 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 ITFG2Q969R8 447 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 FAM162AQ96A26 154 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 PABPN1LA6NDY0 278 aaKnown RBP21.24■□□□□ 0.99
SHMT1-202ENST00000352886 H0Y858 1186 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 H0YAE9 185 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 CXCR6O00574 342 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 ALPLP05186 524 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 CTSAP10619 480 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 ATP1B2P14415 290 aaPredicted RBP21.24■□□□□ 0.99
SHMT1-202ENST00000352886 CCR2P41597 374 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 TTC23LQ6PF05 361 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 SERPINA13PQ6UXR4 307 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 NECAB2Q7Z6G3 386 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 HOMEZQ8IX15 550 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 SLC47A1Q96FL8 570 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 TSSK3Q96PN8 268 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 OCEL1Q9H607 264 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 ASAH2Q9NR71 780 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 PKD2L2Q9NZM6 624 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 UTS2RQ9UKP6 389 aa21.24■□□□□ 0.99
SHMT1-202ENST00000352886 KCNE1BA0A087WTH5 132 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 TRBV5-3A0A0A0MS03 114 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 CCL16O15467 120 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 CLDN8P56748 225 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 ZBED5Q49AG3 693 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 GGTA1PQ4G0N0 100 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 NEK5Q6P3R8 708 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms