RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 CAMK2GQ13555 558 aaPredicted RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 GBX1Q14549 363 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 PCBP2Q15366 365 aaKnown RBP eCLIP12.53□□□□□ -0.4
CLK3-201ENST00000345005 PPP1R3AQ16821 1122 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 ZBED5Q49AG3 693 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 INTS11Q5TA45 600 aaKnown RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 IL23RQ5VWK5 629 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 GPR141Q7Z602 305 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 NLRP8Q86W28 1048 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 PELI3Q8N2H9 469 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 MFSD2AQ8NA29 543 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 OR56A4Q8NGH8 313 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 FNDC8Q8TC99 324 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 CXorf40AQ8TE69 158 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 NUS1Q96E22 293 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 NSUN5Q96P11 429 aaKnown RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 HOPXQ9BPY8 73 aaPredicted RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 HGH1Q9BTY7 390 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 MUC13Q9H3R2 512 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 COQ10BQ9H8M1 238 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 FBRSL1Q9HCM7 1045 aaKnown RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 TNFRSF12AQ9NP84 129 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 CD320Q9NPF0 282 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 SEMA4BQ9NPR2 832 aaPredicted RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 TSR3Q9UJK0 312 aaKnown RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 CROTQ9UKG9 612 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 PCDHGA7Q9Y5G6 932 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 SH3PXD2BA1X283 911 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 AQP12BA6NM10 295 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 PSMD12O00232 456 aaPredicted RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 GIPC1O14908 333 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 UBDO15205 165 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 NUAK1O60285 661 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 RECQL5O94762 991 aaPredicted RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 SNRPB2P08579 225 aaKnown RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 FCGR1AP12314 374 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 C6P13671 934 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 P2RY2P41231 377 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 SOX9P48436 509 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 DPTQ07507 201 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 CNTN1Q12860 1018 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 LRP8Q14114 963 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 INPP5AQ14642 412 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 UGT3A2Q3SY77 523 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 CDKL4Q5MAI5 379 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 KANK2Q63ZY3 851 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 CLEC6AQ6EIG7 209 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 SULT1C3Q6IMI6 304 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 METTL2BQ6P1Q9 378 aaKnown RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 ZBTB49Q6ZSB9 765 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 NEK10Q6ZWH5 1172 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 Q7L0L9 218 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 EFL1Q7Z2Z2 1120 aaKnown RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 AMIGO2Q86SJ2 522 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 PHYKPLQ8IUZ5 450 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 AQP12AQ8IXF9 295 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 ASZ1Q8WWH4 475 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 VPS50Q96JG6 964 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 TRIM54Q9BYV2 358 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 RSPH9Q9H1X1 276 aaPredicted RBP12.53□□□□□ -0.4
CLK3-201ENST00000345005 EPHX3Q9H6B9 360 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 ZDHHC4Q9NPG8 344 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 CD207Q9UJ71 328 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 COQ6Q9Y2Z9 468 aa12.53□□□□□ -0.4
CLK3-201ENST00000345005 ZFC3H1O60293 1989 aaKnown RBP12.52□□□□□ -0.4
CLK3-201ENST00000345005 KANSL1LA0AUZ9 987 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 K7EQS6 105 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 PLK4O00444 970 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 E2F3O00716 465 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 PPP6CO00743 305 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 SYNCRIPO60506 623 aaKnown RBP12.52□□□□□ -0.41
CLK3-201ENST00000345005 MMP20O60882 483 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 MTX2O75431 263 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 CRCPO75575 148 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 ESRRBO95718 433 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 ADH1BP00325 375 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 C8GP07360 202 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 ENO2P09104 434 aaPredicted RBP12.52□□□□□ -0.41
CLK3-201ENST00000345005 IL10P22301 178 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 CD97P48960 835 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 NME5P56597 212 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 HSPA14Q0VDF9 509 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 TMEM115Q12893 351 aaPredicted RBP12.52□□□□□ -0.41
CLK3-201ENST00000345005 FASTKQ14296 549 aaKnown RBP12.52□□□□□ -0.41
CLK3-201ENST00000345005 RBBP7Q16576 425 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 CCDC92Q53HC0 331 aaPredicted RBP12.52□□□□□ -0.41
CLK3-201ENST00000345005 TTC23LQ6PF05 361 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 CCDC80Q76M96 950 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 DHFR2Q86XF0 187 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 ELMO1Q92556 727 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 CNDP2Q96KP4 475 aaKnown RBP12.52□□□□□ -0.41
CLK3-201ENST00000345005 ZCCHC2Q9C0B9 1178 aaKnown RBP12.52□□□□□ -0.41
CLK3-201ENST00000345005 CAAP1Q9H8G2 361 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 PFDN4Q9NQP4 134 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 CD300AQ9UGN4 299 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 EIF2B4Q9UI10 523 aaKnown RBP12.52□□□□□ -0.41
CLK3-201ENST00000345005 G3BP2Q9UN86 482 aaKnown RBP12.52□□□□□ -0.41
CLK3-201ENST00000345005 RNF11Q9Y3C5 154 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 FADS3Q9Y5Q0 445 aa12.52□□□□□ -0.41
CLK3-201ENST00000345005 MYO10Q9HD67 2058 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms