RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CDYLQ9Y232 598 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 PIEZO1Q92508 2521 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 C4BP0C0L5 1744 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 DNAJC13O75165 2243 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 TTC26A0AVF1 554 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 NDUFAB1O14561 156 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 NDUFS4O43181 175 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 C4BPAP04003 597 aaKnown RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 FDXRP22570 491 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 SLC5A2P31639 672 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 PLCXD2Q0VAA5 305 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 RFTN2Q52LD8 501 aaPredicted RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 KCTD11Q693B1 232 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 RPTNQ6XPR3 784 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF572Q7Z3I7 529 aaPredicted RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 POLNQ7Z5Q5 900 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 ADGRG6Q86SQ4 1221 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 OR2AJ1Q8NGZ0 328 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 C1orf54Q8WWF1 131 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 HSD17B14Q9BPX1 270 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 SLC12A9Q9BXP2 914 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 BEX2Q9BXY8 128 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 EQTNQ9NQ60 294 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 KBTBD4Q9NVX7 518 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 COPG2Q9UBF2 871 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 SLC22A14Q9Y267 594 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 ATP6AP2A0A1C7CYW4 349 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 A0A1W2PP18 115 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 ATP6AP2O75787 350 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 LRIG2O94898 1065 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 PGLSO95336 258 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 F3P13726 295 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 DNASE1L1P49184 302 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 MANFP55145 182 aaKnown RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 MZT1Q08AG7 82 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 LARS2Q15031 903 aaKnown RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 PCID2Q5JVF3 399 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 CYP4Z2PQ8N1L4 340 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 TESCQ96BS2 214 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 CCT7Q99832 543 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 C10orf88Q9H8K7 445 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 SPATS2LQ9NUQ6 558 aaKnown RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 NLGN3Q9NZ94 848 aa8.22□□□□□ -1.09
HMGB1-203ENST00000341423 REXO2Q9Y3B8 237 aaKnown RBP8.22□□□□□ -1.09
HMGB1-203ENST00000341423 FOXN3O00409 490 aaPredicted RBP8.21□□□□□ -1.09
HMGB1-203ENST00000341423 RGS14O43566 566 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 CYTH3O43739 400 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 ZACNQ401N2 412 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 SMYD5Q6GMV2 418 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 HDDC2Q7Z4H3 204 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 SLC22A9Q8IVM8 553 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 ZBTB2Q8N680 514 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF611Q8N823 705 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 GPT2Q8TD30 523 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 GPR151Q8TDV0 419 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 TRAPPC9Q96Q05 1148 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 THUMPD3Q9BV44 507 aaKnown RBP8.21□□□□□ -1.09
HMGB1-203ENST00000341423 SPHK1Q9NYA1 384 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 KLHL14Q9P2G3 628 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 SNX11Q9Y5W9 270 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 SPAG17Q6Q759 2223 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 MAPK12P53778 367 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 HERC3Q15034 1050 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 TRMT10CQ7L0Y3 403 aaKnown RBP8.21□□□□□ -1.09
HMGB1-203ENST00000341423 STAG3L4Q8TBR4 150 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 SLC19A3Q9BZV2 496 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF355PQ9NSJ1 428 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 TAAR2Q9P1P5 351 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 TRPS1Q9UHF7 1281 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 OR1A2Q9Y585 309 aa8.21□□□□□ -1.09
HMGB1-203ENST00000341423 MGRN1O60291 552 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 TBX10O75333 385 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 KRT75O95678 551 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 CYP11A1P05108 521 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 CKMT1AP12532 417 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 TSPAN8P19075 237 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 LMO2P25791 158 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF143P52747 638 aaPredicted RBP8.21□□□□□ -1.1
HMGB1-203ENST00000341423 HSD11B2P80365 405 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 RING1Q06587 406 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 TMEM154Q6P9G4 183 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 WDR59Q6PJI9 974 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 BOLLQ8N9W6 283 aaKnown RBP8.21□□□□□ -1.1
HMGB1-203ENST00000341423 FAM181AQ8N9Y4 354 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 TMEM40Q8WWA1 233 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 RETREG1Q9H6L5 497 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 A0A1W2PPC4 97 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 SURF4O15260 269 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 PRKCGP05129 697 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 MYCLP1P12525 358 aaPredicted RBP8.21□□□□□ -1.1
HMGB1-203ENST00000341423 ADRA1DP25100 572 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 ITGB7P26010 798 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 CDH5P33151 784 aaPredicted RBP8.21□□□□□ -1.1
HMGB1-203ENST00000341423 RAD52P43351 418 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 RAD23BP54727 409 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF211Q13398 564 aaPredicted RBP8.21□□□□□ -1.1
HMGB1-203ENST00000341423 DPYSQ14117 519 aa8.21□□□□□ -1.1
HMGB1-203ENST00000341423 ZNF267Q14586 743 aaPredicted RBP8.21□□□□□ -1.1
HMGB1-203ENST00000341423 REP15Q6BDI9 236 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms