RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TRIM74Q86UV6 250 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 STK32CQ86UX6 486 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 OR2A12Q8NGT7 310 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 TSPEARQ8WU66 669 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 GTF2H4Q92759 462 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 APIPQ96GX9 242 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 MTERF1Q99551 399 aaKnown RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 INPP5KQ9BT40 448 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 RIOK2Q9BVS4 552 aaKnown RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 PNPLA3Q9NST1 481 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 HS3ST2Q9Y278 367 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 ST14Q9Y5Y6 855 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 U3KQV3 271 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 SMIM31A0A1B0GVY4 71 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 IFRD1O00458 451 aaPredicted RBP10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ACOX3O15254 700 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 GPIP06744 558 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ATP1B2P14415 290 aaPredicted RBP10.09□□□□□ -0.79
LIMA1-201ENST00000341247 NAA20P61599 178 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 PHC1P78364 1004 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 LILRA6Q6PI73 481 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 GALNT10Q86SR1 603 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 CLEC4FQ8N1N0 589 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 IRF7Q92985 503 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 FAM162AQ96A26 154 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ZNF583Q96ND8 569 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 WRAP53Q9BUR4 548 aaKnown RBP10.09□□□□□ -0.79
LIMA1-201ENST00000341247 SLC32A1Q9H598 525 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 TDP1Q9NUW8 608 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 C1orf109Q9NX04 203 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 SLC25A37Q9NYZ2 338 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ADGRE2Q9UHX3 823 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 INVSQ9Y283 1065 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ZNF510Q9Y2H8 683 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 COQ6Q9Y2Z9 468 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 FADS3Q9Y5Q0 445 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 H3BNH8 94 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 SLC28A1O00337 649 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 PLK4O00444 970 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 PRAMEF4O60810 478 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 KRT6AP02538 564 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 KRT6BP04259 564 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 RHOP08100 348 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 EBLN1P0CF75 366 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 PCSK6P29122 969 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 KRT6CP48668 564 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 METAP1P53582 386 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 MAPK10P53779 464 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 CYP4F3Q08477 520 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 APOFQ13790 326 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ATP6AP1Q15904 470 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 CCSMST1Q4G0I0 132 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 MPP7Q5T2T1 576 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 PRAMEF9Q5VWM5 478 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 LYPLAL1Q5VWZ2 237 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ADNP2Q6IQ32 1131 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ANKRD26P1Q6NSI1 321 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 FAM83DQ9H4H8 585 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 PCDH12Q9NPG4 1184 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 GNGT2O14610 69 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 AREL1O15033 823 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 B4GAT1O43505 415 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 NOBOXO60393 691 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ANXA6P08133 673 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 TCF3P15923 654 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 HTR1EP28566 365 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 RPS9P46781 194 aaKnown RBP10.09□□□□□ -0.79
LIMA1-201ENST00000341247 NR1H2P55055 460 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 NKG7Q16617 165 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 GRASPQ7Z6J2 395 aaPredicted RBP10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ADIPOR2Q86V24 386 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 CACUL1Q86Y37 369 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 PTRH1Q86Y79 214 aaKnown RBP10.09□□□□□ -0.79
LIMA1-201ENST00000341247 PNPT1Q8TCS8 783 aaKnown RBP10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ISG20Q96AZ6 181 aaKnown RBP10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ANKRD60Q9BZ19 345 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 PKD2L2Q9NZM6 624 aa10.09□□□□□ -0.79
LIMA1-201ENST00000341247 ARHGEF15O94989 841 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 TIMP1P01033 207 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 EPCAMP16422 314 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 JAK1P23458 1154 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 AOAHP28039 575 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 CTNNB1P35222 781 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 CSNK1DP48730 415 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 CHRNB3Q05901 458 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 CHIT1Q13231 466 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 TMTC4Q5T4D3 741 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 MSRB3Q8IXL7 192 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 TBC1D21Q8IYX1 336 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 CBARPQ8N350 705 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-201ENST00000341247 DHRSXQ8N5I4 330 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 DPP10Q8N608 796 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 TMBIM1Q969X1 311 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 ECHDC3Q96DC8 303 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 ZFYVE19Q96K21 471 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 LMLNQ96KR4 655 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 SPHK2Q9NRA0 654 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 GPRC5BQ9NZH0 403 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 NEUROG3Q9Y4Z2 214 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 PCDHB14Q9Y5E9 798 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms