RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ZFYVE26Q68DK2 2539 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 PIPSLA2A3N6 862 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 FAM187AA6NFU0 413 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 C2orf74A8MZ97 194 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 K7ENP7 123 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 RAD1O60671 282 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 TIAF1O95411 115 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 DLGAP3O95886 979 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 CHRM5P08912 532 aaPredicted RBP15.32■□□□□ 0.04
CLN3-201ENST00000333496 ST6GAL1P15907 406 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 GABRB3P28472 473 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 PEBP1P30086 187 aaKnown RBP15.32■□□□□ 0.04
CLN3-201ENST00000333496 DMTNQ08495 405 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 VAC14Q08AM6 782 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 FASTKD3Q14CZ7 662 aaKnown RBP15.32■□□□□ 0.04
CLN3-201ENST00000333496 KYNUQ16719 465 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 CCSMST1Q4G0I0 132 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 ACSBG2Q5FVE4 666 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 INO80CQ6PI98 192 aaPredicted RBP15.32■□□□□ 0.04
CLN3-201ENST00000333496 CCDC81Q6ZN84 652 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 DCUN1D3Q8IWE4 304 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 C2CD4AQ8NCU7 369 aaPredicted RBP15.32■□□□□ 0.04
CLN3-201ENST00000333496 GIMAP7Q8NHV1 300 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 ELMO2Q96JJ3 720 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 OR2A14Q96R47 310 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 FAM167BQ9BTA0 163 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 OR6C2Q9NZP2 312 aa15.32■□□□□ 0.04
CLN3-201ENST00000333496 KRT87PA6NCN2 255 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 E7ESA3 106 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 ATP8B1O43520 1251 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 MATN4O95460 622 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 C1orf105O95561 183 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 PVRP15151 417 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 UGT2B7P16662 529 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 PKLRP30613 574 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 ARL4CP56559 192 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 CBLBQ13191 982 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 TUBB3Q13509 450 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 MANEAQ5SRI9 462 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 STEAP4Q687X5 459 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 TRMT10BQ6PF06 316 aaKnown RBP15.31■□□□□ 0.04
CLN3-201ENST00000333496 SPESP1Q6UW49 350 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 GPR155Q7Z3F1 870 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 MAATS1Q7Z4T9 603 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 CNTN4Q8IWV2 1026 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 ZBTB2Q8N680 514 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 LINC01555Q8NAE3 123 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 LRRC39Q96DD0 335 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 CERS2Q96G23 380 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 CFAP36Q96G28 342 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 TRAPPC9Q96Q05 1148 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 DPH5Q9H2P9 285 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 FGF21Q9NSA1 209 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 SLC17A6Q9P2U8 582 aa15.31■□□□□ 0.04
CLN3-201ENST00000333496 TSR3Q9UJK0 312 aaKnown RBP15.31■□□□□ 0.04
CLN3-201ENST00000333496 CTAGE15A4D2H0 777 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 E5RI56 91 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 SPAG6O75602 509 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 RPN2P04844 631 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 CTAGE8P0CG41 777 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 BDKRB1P46663 353 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 ARL4DP49703 201 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 RAB28P51157 221 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 TIAL1Q01085 375 aaKnown RBP eCLIP15.3■□□□□ 0.04
CLN3-201ENST00000333496 ACY1Q03154 408 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 GPR19Q15760 415 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 KLHL38Q2WGJ6 581 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.3■□□□□ 0.04
CLN3-201ENST00000333496 TEDDM1Q5T9Z0 273 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 DUPD1Q68J44 220 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 CTAGE6Q86UF2 777 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 TRIM73Q86UV7 250 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 PPP1R3BQ86XI6 285 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 ANKMY2Q8IV38 441 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 RASGRP3Q8IV61 690 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 CTAGE4Q8IX94 777 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 CACNA2D3Q8IZS8 1091 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 NLGN4XQ8N0W4 816 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 IL22RA1Q8N6P7 574 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 NLGN4YQ8NFZ3 816 aaPredicted RBP15.3■□□□□ 0.04
CLN3-201ENST00000333496 GSDMBQ8TAX9 411 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 SKA2Q8WVK7 121 aaPredicted RBP15.3■□□□□ 0.04
CLN3-201ENST00000333496 KCNJ9Q92806 393 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 ZNF501Q96CX3 271 aaPredicted RBP15.3■□□□□ 0.04
CLN3-201ENST00000333496 IL17FQ96PD4 163 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 AARSD1Q9BTE6 412 aaKnown RBP15.3■□□□□ 0.04
CLN3-201ENST00000333496 ULBP3Q9BZM4 244 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 KLHL25Q9H0H3 589 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 SOHLH2Q9NX45 425 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 GRHL1Q9NZI5 618 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 ZC3H7BQ9UGR2 993 aaKnown RBP15.3■□□□□ 0.04
CLN3-201ENST00000333496 RARRES3Q9UL19 164 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 FER1L5A0AVI2 2057 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 HEATR5BQ9P2D3 2071 aa15.3■□□□□ 0.04
CLN3-201ENST00000333496 SEC16AO15027 2179 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 KIAA0754O94854 1291 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 AHSGP02765 367 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 ATP5DP30049 168 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 CARSP49589 748 aaKnown RBP15.29■□□□□ 0.04
CLN3-201ENST00000333496 PDIA2Q13087 525 aaKnown RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms