RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 POMT2Q9UKY4 750 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 PIPSLA2A3N6 862 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 TLCD2A6NGC4 264 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 C2orf74A8MZ97 194 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 TOX3O15405 576 aaPredicted RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 TNFSF15O95150 251 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 ITIH1P19827 911 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 MAP4P27816 1152 aaKnown RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 TNFRSF8P28908 595 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 RBMS1P29558 406 aaKnown RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 MAPK10P53779 464 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 PMS2P54278 862 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 TUBB4BP68371 445 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 POU4F1Q01851 419 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 CYP4F3Q08477 520 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 USP10Q14694 798 aaKnown RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 UBE2R2Q712K3 238 aaPredicted RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 TAX1BP1Q86VP1 789 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 CEP97Q8IW35 865 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 RAB42Q8N4Z0 105 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 C2orf73Q8N5S3 287 aaPredicted RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 EIF1ADQ8N9N8 165 aaKnown RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 ASB11Q8WXH4 323 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 TSPAN17Q96FV3 270 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 CD180Q99467 661 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 GPR22Q99680 433 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 MENTQ9BUN1 341 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 RAB11FIP5Q9BXF6 653 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 FUT8Q9BYC5 575 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 ZNF768Q9H5H4 540 aaKnown RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 SPHK1Q9NYA1 384 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 PCDHGA8Q9Y5G5 932 aa15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 V9GYY5 206 aaPredicted RBP15.4■□□□□ 0.06
CCDC28A-201ENST00000332797 KIF26BQ2KJY2 2108 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 A0A087WUV0 522 aaPredicted RBP15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 IGHV5-51A0A0C4DH38 117 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 EFCAB7A8K855 629 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 TSPAN12O95859 305 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 SYF2O95926 243 aaKnown RBP15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 CCL4P13236 92 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 ZNF37AP17032 561 aaPredicted RBP15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 CDH3P22223 829 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 ETV5P41161 510 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 FBXO38Q6PIJ6 1188 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 TMEM207Q6UWW9 146 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 TRMT10CQ7L0Y3 403 aaKnown RBP15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 OR2L8Q8NGY9 312 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 UBXN4Q92575 508 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 PRR11Q96HE9 360 aaPredicted RBP15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 PPM1MQ96MI6 270 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 CCDC86Q9H6F5 360 aaKnown RBP15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 GPAMQ9HCL2 828 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 OCIAD1Q9NX40 245 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 ADAMTS6Q9UKP5 1117 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 ASPMQ8IZT6 3477 aa15.39■□□□□ 0.05
CCDC28A-201ENST00000332797 CHD8Q9HCK8 2581 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 ISM1B1AKI9 464 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 GFYI3L273 518 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 MYO1CO00159 1063 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 ZBTB14O43829 449 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 ITGA2BP08514 1039 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 UGT2B7P16662 529 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 PRDX3P30048 256 aaKnown RBP15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 PEBP1P30086 187 aaKnown RBP15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 ARL4DP49703 201 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 SPESP1Q6UW49 350 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 TRIM73Q86UV7 250 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 LSMEM2Q8N112 164 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 NKAPQ8N5F7 415 aaKnown RBP15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 LINC01555Q8NAE3 123 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 OR9A1PQ8NGU1 263 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 DENND1AQ8TEH3 1009 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 PKP4Q99569 1192 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 POPDC3Q9HBV1 291 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 SYTL2Q9HCH5 934 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 SPATA7Q9P0W8 599 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 LNPEPQ9UIQ6 1025 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 KNTC1P50748 2209 aa15.38■□□□□ 0.05
CCDC28A-201ENST00000332797 PHGDHO43175 533 aaKnown RBP15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 RIPK2O43353 540 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 C8GP07360 202 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 FGF3P11487 239 aaPredicted RBP15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 STMN1P16949 149 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 CYP2A7P20853 494 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 VSNL1P62760 191 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 SP140Q13342 867 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 BMPR2Q13873 1038 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 KIR2DS3Q14952 304 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 ANKS6Q68DC2 871 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 RASGRP3Q8IV61 690 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 FBXO15Q8NCQ5 510 aaPredicted RBP15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 KLHL6Q8WZ60 621 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 SLC46A1Q96NT5 459 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 OR2A14Q96R47 310 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 TXLNGYQ9BZA5 131 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 KLHL25Q9H0H3 589 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 ASCL3Q9NQ33 180 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 C1GALT1Q9NS00 363 aa15.37■□□□□ 0.05
CCDC28A-201ENST00000332797 SOHLH2Q9NX45 425 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms