RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 KCNS3Q9BQ31 491 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 SLC30A2Q9BRI3 323 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 PDCD2LQ9BRP1 358 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 SLC25A23Q9BV35 468 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 TMEM245Q9H330 911 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 RC3H2Q9HBD1 1191 aaKnown RBP11.61□□□□□ -0.55
SHMT2-201ENST00000328923 ACOT13Q9NPJ3 140 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 PXMP2Q9NR77 195 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 RNF146Q9NTX7 359 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 FAM49BQ9NUQ9 324 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 LRFN2Q9ULH4 789 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 EDARQ9UNE0 448 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 LOC100506127A0A0U1RQW1 187 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 DPYSL4O14531 572 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 MDM4O15151 490 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 DFNA5O60443 496 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 ANGPTL1O95841 491 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 WDPCPO95876 746 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 CYP11A1P05108 521 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 DARSP14868 501 aaKnown RBP11.61□□□□□ -0.55
SHMT2-201ENST00000328923 HLA-DMAP28067 261 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 NUP62P37198 522 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-201ENST00000328923 HSD17B7P56937 341 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 IER5Q5VY09 327 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 GPR139Q6DWJ6 353 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 GPRIN3Q6ZVF9 776 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 ATG16L2Q8NAA4 619 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 ASB15Q8WXK1 588 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 COQ8BQ96D53 544 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 VPS39Q96JC1 886 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 ZBTB45Q96K62 511 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-201ENST00000328923 VAT1Q99536 393 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 RBBP8Q99708 897 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 LDAHQ9H6V9 325 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 TMEM134Q9H6X4 195 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 USE1Q9NZ43 259 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 KLHL42Q9P2K6 505 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 FBXO10Q9UK96 956 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 ZNF214Q9UL59 606 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-201ENST00000328923 LIPT1Q9Y234 373 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 CITO14578 2027 aa11.61□□□□□ -0.55
SHMT2-201ENST00000328923 K7ERI5 159 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 OGTO15294 1046 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 MYCLP12524 364 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 HSD17B1P14061 328 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 CD19P15391 556 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 CHMP24386 653 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 HLA-FP30511 346 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 SPRP35270 261 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 RECQLP46063 649 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 LIMK2P53671 638 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 OAZ1P54368 228 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 IL5RAQ01344 420 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 RELQ04864 619 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 EMC2Q15006 297 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 DUOXA2Q1HG44 320 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 ZNF699Q32M78 642 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 SUPT20HL1Q3ZLR7 823 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 SPANXN3Q5MJ09 141 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 NOL9Q5SY16 702 aaKnown RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 FAM102AQ5T9C2 384 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 LIPMQ5VYY2 423 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 FCRLBQ6BAA4 426 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 LAIR1Q6GTX8 287 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 HACD2Q6Y1H2 254 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 C17orf107Q6ZR85 190 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 MRPL10Q7Z7H8 261 aaKnown RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 B3GNT8Q7Z7M8 397 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 CLRN3Q8NCR9 226 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 PAPD5Q8NDF8 572 aaKnown RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 SERPINB11Q96P15 392 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 SLC22A4Q9H015 551 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 CAB39LQ9H9S4 337 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 ADARB2Q9NS39 739 aaKnown RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 ABCD2Q9UBJ2 740 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 VPS9D1Q9Y2B5 631 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 MTF2Q9Y483 593 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 ALG5Q9Y673 324 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 KCNMB2Q9Y691 235 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 SPATA31C2B4DYI2 1134 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 NT5C1B-RDH14C9J2C7 533 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 UBDO15205 165 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 ERN1O75460 977 aaKnown RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 RFPL3O75679 317 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 ECDO95905 644 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-201ENST00000328923 PSAPP07602 524 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 JUPP14923 745 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 CHRM3P20309 590 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 GRK5P34947 590 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 IKZF1Q13422 519 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 TMEM132BQ14DG7 1078 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 TATDN3Q17R31 274 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 ARMCX4Q5H9R4 360 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 CLLU1Q5K131 121 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 PRSS36Q5K4E3 855 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 RTP2Q5QGT7 225 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 ZYG11AQ6WRX3 759 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 ZPBP2Q6X784 338 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 CATSPERGQ6ZRH7 1159 aa11.6□□□□□ -0.55
SHMT2-201ENST00000328923 FAM183BPQ6ZVS7 135 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms