RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 NPR3P17342 541 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 GRIK1P39086 918 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 SLC26A3P40879 764 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 RPL34P49207 117 aaKnown RBP13.19□□□□□ -0.3
SKA3-201ENST00000298260 DSC2Q02487 901 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 NFE2Q16621 373 aaPredicted RBP13.19□□□□□ -0.3
SKA3-201ENST00000298260 SGO1Q5FBB7 561 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 XKR7Q5GH72 579 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 SPANXN4Q5MJ08 99 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 FBXO47Q5MNV8 452 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 LETMD1Q6P1Q0 360 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 ZDHHC21Q8IVQ6 265 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 OR4M1Q8NGD0 313 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 FAM167AQ96KS9 214 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 CEP19Q96LK0 163 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 SLC2A13Q96QE2 648 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 BCL7BQ9BQE9 202 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 AASDHPPTQ9NRN7 309 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 TTC3P53804 2025 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 A0A0B4J293 547 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 TYW5A2RUC4 315 aaKnown RBP13.19□□□□□ -0.3
SKA3-201ENST00000298260 SMIM30A4D0T7 59 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 H3BM21 787 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 BTN3A1O00481 513 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 CAPN5O15484 640 aaPredicted RBP13.19□□□□□ -0.3
SKA3-201ENST00000298260 TSC22D2O75157 780 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 PTHP01270 115 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 STSP08842 583 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 BMP1P13497 986 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 RRM2P31350 389 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 DDOSTP39656 456 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 SERPINH1P50454 418 aaKnown RBP13.19□□□□□ -0.3
SKA3-201ENST00000298260 HUNKP57058 714 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 ERVPABLB-1P60509 514 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 NFKB2Q00653 900 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 PRKCDQ05655 676 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 PWP1Q13610 501 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 STARD3Q14849 445 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 PARP15Q460N3 678 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 RAB43Q86YS6 212 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 CRYBG2Q8N1P7 616 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 ATG16L2Q8NAA4 619 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 BLOC1S5Q8TDH9 187 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 RNF31Q96EP0 1072 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 TRMT61AQ96FX7 289 aaKnown RBP13.19□□□□□ -0.3
SKA3-201ENST00000298260 KCNC2Q96PR1 638 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 DHRS9Q9BPW9 319 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 RNF39Q9H2S5 420 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 STMN3Q9NZ72 180 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 SLC6A14Q9UN76 642 aa13.19□□□□□ -0.3
SKA3-201ENST00000298260 FFAR3O14843 346 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 ANKRD28O15084 1053 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 GPR42O15529 346 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 TREHO43280 583 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 KIAA0513O60268 411 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 FDXRP22570 491 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 TNFSF8P32971 234 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 PPP3CCP48454 512 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 DGKEP52429 567 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 GEMP55040 296 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 RPP38P78345 283 aaKnown RBP13.18□□□□□ -0.3
SKA3-201ENST00000298260 TYSND1Q2T9J0 566 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 ABI3BPQ7Z7G0 1075 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 UNC93AQ86WB7 457 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 ENTHD1Q8IYW4 607 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 ZNF557Q8N988 423 aaPredicted RBP13.18□□□□□ -0.3
SKA3-201ENST00000298260 VANGL1Q8TAA9 524 aaPredicted RBP13.18□□□□□ -0.3
SKA3-201ENST00000298260 GIPC2Q8TF65 315 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 PMEPA1Q969W9 287 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 UCK2Q9BZX2 261 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 B3GNT4Q9C0J1 378 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 GORASP2Q9H8Y8 452 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 MRM3Q9HC36 420 aaKnown RBP13.18□□□□□ -0.3
SKA3-201ENST00000298260 ACOXLQ9NUZ1 547 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 TEKT2Q9UIF3 430 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 PER2O15055 1255 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 CACNG3O60359 315 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 ZNF286BP0CG31 522 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 POU3F3P20264 500 aaPredicted RBP13.18□□□□□ -0.3
SKA3-201ENST00000298260 SSTR4P31391 388 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 RPL38P63173 70 aaKnown RBP13.18□□□□□ -0.3
SKA3-201ENST00000298260 FADDQ13158 208 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 AP5B1Q2VPB7 878 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 FAM171A1Q5VUB5 890 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 CAPN13Q6MZZ7 669 aaPredicted RBP13.18□□□□□ -0.3
SKA3-201ENST00000298260 TUBA3EQ6PEY2 450 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 TAC4Q86UU9 113 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 CACTIN-AS1Q8N1I8 211 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 FAM109AQ8N4B1 249 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 SETD9Q8NE22 299 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 GPR151Q8TDV0 419 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 MKRN2Q9H000 416 aaKnown RBP13.18□□□□□ -0.3
SKA3-201ENST00000298260 UCKL1Q9NWZ5 548 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 MIOSQ9NXC5 875 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 A0A0G2JMZ2 1700 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 LRRC37A2A6NM11 1700 aa13.18□□□□□ -0.3
SKA3-201ENST00000298260 SERPINF2P08697 491 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 ADRA2AP08913 450 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SLC2A4P14672 509 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 PIK3CBP42338 1070 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms