RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 PEX14O75381 377 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 RPLP0P05388 317 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 PTPN2P17706 415 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ADAM15Q13444 863 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 PRKD1Q15139 912 aaPredicted RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 DUSP28Q4G0W2 176 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 SPIN4Q56A73 249 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ACDQ96AP0 544 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 LRRC10BA6NIK2 292 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ADM5C9JUS6 153 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 IL7RP16871 459 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ACTR1AP61163 376 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 IFI44LQ53G44 452 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 GALNT5Q7Z7M9 940 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 PROKR2Q8NFJ6 384 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 CYP2S1Q96SQ9 504 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 C1orf109Q9NX04 203 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 UBIAD1Q9Y5Z9 338 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 PIK3C2BO00750 1634 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 E7ENX8 843 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 SCDO00767 359 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 ADAMTS3O15072 1205 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 BANF1O75531 89 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 SYNGR4O95473 234 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 FMO1Q01740 532 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 CD47Q08722 323 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 IL23RQ5VWK5 629 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 SLC9A4Q6AI14 798 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 GEMIN6Q8WXD5 167 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 METTL8Q9H825 291 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 DDX4Q9NQI0 724 aaKnown RBP9.17□□□□□ -0.94
CUX1-201ENST00000292535 FBXW2Q9UKT8 454 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 HES2Q9Y543 173 aa9.17□□□□□ -0.94
CUX1-201ENST00000292535 TEX13CA0A0J9YWL9 993 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 TACR2P21452 398 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 EFR3AQ14156 821 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 MPP2Q14168 576 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 IQCHQ86VS3 1027 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 FUKQ8N0W3 1084 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 ZCCHC10Q8TBK6 192 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 PMEPA1Q969W9 287 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 ZNF471Q9BX82 626 aaPredicted RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 TMEM121BQ9BXQ6 578 aaPredicted RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 ZNF350Q9GZX5 532 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 SP140LQ9H930 580 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 FADS3Q9Y5Q0 445 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 PPEF2O14830 753 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 PIK3CBP42338 1070 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 PRKCDQ05655 676 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 FAM174BQ3ZCQ3 159 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 KLHL22Q53GT1 634 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 UBAP2Q5T6F2 1119 aaKnown RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 IDNKQ5T6J7 187 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 GIPC3Q8TF64 312 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 NACAE9PAV3 2078 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 NPIPA5E9PKD4 350 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 SEPT4O43236 478 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 IL33O95760 270 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 ZNF806P0C7X5 589 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 DGKGP49619 791 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 CASP6P55212 293 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 RHBDL3P58872 404 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 KCNJ2P63252 427 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 OCLNQ16625 522 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 NELFAQ9H3P2 528 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 NPIPA1Q9UND3 350 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 IQCCQ4KMZ1 466 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 TOR1AIP1Q5JTV8 583 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 NPAS4Q8IUM7 802 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 PRSS58Q8IYP2 241 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 LINC00471Q8N535 108 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 SPATA7Q9P0W8 599 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 P2RX2Q9UBL9 471 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 M0R036 132 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 PSMD9O00233 223 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 CLPXO76031 633 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 EOMESO95936 686 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 CORO1AP31146 461 aaKnown RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 HSPB3Q12988 150 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 DECR1Q16698 335 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 TPGS2Q68CL5 300 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 CWF19L1Q69YN2 538 aaKnown RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 HID1Q8IV36 788 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 SLC44A3Q8N4M1 653 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 PRELID2Q8N945 189 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 SLAIN1Q8ND83 568 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 DUSP9Q99956 384 aaKnown RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 GPR88Q9GZN0 384 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 EIF3KQ9UBQ5 218 aaKnown RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 DIP2BQ9P265 1576 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 C5orf51A6NDU8 294 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 IFNA7P01567 189 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 ZNF227Q86WZ6 799 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 CFAP52Q8N1V2 620 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 C11orf84Q9BUA3 381 aaPredicted RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 WDR26Q9H7D7 661 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 ANKRD63C9JTQ0 380 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 DUSP11O75319 330 aaKnown RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 CAPN15O75808 1086 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 SLC6A4P31645 630 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms