RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 SLC22A14Q9Y267 594 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 MYO7AQ13402 2215 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 RFPL2O75678 378 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 KRT6AP02538 564 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 KRT6BP04259 564 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 CLTBP09497 229 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 CBSLP0DN79 551 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 CBSP35520 551 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 CAPGP40121 348 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 YAP1P46937 504 aaKnown RBP17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 KRT6CP48668 564 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 PPP1R8Q12972 351 aaKnown RBP17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 LAPTM5Q13571 262 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 NEK5Q6P3R8 708 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 PRR23BQ6ZRT6 265 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 HM13Q8TCT9 377 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 ELOVL6Q9H5J4 265 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 HPS4Q9NQG7 708 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 PPIL1Q9Y3C6 166 aa17.91■□□□□ 0.46
SHKBP1-201ENST00000291842 UPK3BL1B0FP48 263 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 UPK3BL2E5RIL1 263 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 UPK1AO00322 258 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 IL6P05231 212 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 HIST1H2AGP0C0S8 130 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 RAP2AP10114 183 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 ATP1B2P14415 290 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 HIST1H2ADP20671 130 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 WEE1P30291 646 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 MTHFRP42898 656 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 CHRNB3Q05901 458 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 FAM98BQ52LJ0 330 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 KLHL23Q8NBE8 558 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 ZNF548Q8NEK5 533 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 CYB5D2Q8WUJ1 264 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 HIST1H2AHQ96KK5 128 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 EGLN2Q96KS0 407 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 HIST1H2AJQ99878 128 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 H2AFJQ9BTM1 129 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 INVSQ9Y283 1065 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 PCDHB14Q9Y5E9 798 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 OR2AG2A6NM03 316 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 CLGNO14967 610 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 PRAMEF4O60810 478 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 PABPC1P11940 636 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 PPM1AP35813 382 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 PTPN5P54829 565 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 RPS14P62263 151 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 TEAD2Q15562 447 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 PGS1Q32NB8 556 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 PRAMEF9Q5VWM5 478 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 BORAQ6PGQ7 559 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 GDPD4Q6W3E5 623 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 LPCAT2Q7L5N7 544 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 CHST15Q7LFX5 561 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 HSD11B1LQ7Z5J1 315 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 STK32CQ86UX6 486 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 OR10Q1Q8NGQ4 319 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 OR2A12Q8NGT7 310 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 ASB11Q8WXH4 323 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 INPP5KQ9BT40 448 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 SLC12A9Q9BXP2 914 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 CPEB1Q9BZB8 566 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 RSL24D1Q9UHA3 163 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 HEMK1Q9Y5R4 338 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 C5orf42Q9H799 3197 aa17.9■□□□□ 0.46
SHKBP1-201ENST00000291842 CDH23Q9H251 3354 aa17.89■□□□□ 0.46
SHKBP1-201ENST00000291842 IGLV3-16A0A075B6K0 115 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 HIDE1A8MVS5 230 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 RBBP5Q15291 538 aaKnown RBP17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 TMEM215Q68D42 235 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 CCDC149Q6ZUS6 474 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 Q6ZVL8 140 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 HS3ST5Q8IZT8 346 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 CHCHD4Q8N4Q1 142 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 GLB1L3Q8NCI6 653 aaPredicted RBP17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 FOXJ1Q92949 421 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 APIPQ96GX9 242 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 ZNF639Q9UID6 485 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 MAFFQ9ULX9 164 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 PCDHGA11Q9Y5H2 935 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 CHD7Q9P2D1 2997 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 TYRP14679 529 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 ETV3P41162 512 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 TUBA4AP68366 448 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 KCTD21Q4G0X4 260 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 RUNDC3AQ59EK9 446 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 CLEC4FQ8N1N0 589 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 ELMO1Q92556 727 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 NCLNQ969V3 563 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 FAM162AQ96A26 154 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 HIC2Q96JB3 615 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 ZNF641Q96N77 438 aaPredicted RBP17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 SLC29A3Q9BZD2 475 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 OCEL1Q9H607 264 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 LTB4R2Q9NPC1 389 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 HCFC2Q9Y5Z7 792 aa17.89■□□□□ 0.45
SHKBP1-201ENST00000291842 ELOVL7A1L3X0 281 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 TRIM43BA6NCK2 446 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 TMEM202A6NGA9 273 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 H0Y858 1186 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms