RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 INO80DQ53TQ3 878 aaPredicted RBP16.25■□□□□ 0.19
VPS54-201ENST00000272322 EFL1Q7Z2Z2 1120 aaKnown RBP16.25■□□□□ 0.19
VPS54-201ENST00000272322 DCAF4L2Q8NA75 395 aa16.25■□□□□ 0.19
VPS54-201ENST00000272322 ING5Q8WYH8 240 aa16.25■□□□□ 0.19
VPS54-201ENST00000272322 SDCCAG3Q96C92 435 aa16.25■□□□□ 0.19
VPS54-201ENST00000272322 THAP11Q96EK4 314 aa16.25■□□□□ 0.19
VPS54-201ENST00000272322 HIST1H2AHQ96KK5 128 aa16.25■□□□□ 0.19
VPS54-201ENST00000272322 BARD1Q99728 777 aaKnown RBP16.25■□□□□ 0.19
VPS54-201ENST00000272322 HIST1H2AJQ99878 128 aa16.25■□□□□ 0.19
VPS54-201ENST00000272322 H2AFJQ9BTM1 129 aa16.25■□□□□ 0.19
VPS54-201ENST00000272322 FANCEQ9HB96 536 aa16.25■□□□□ 0.19
VPS54-201ENST00000272322 PRDM8Q9NQV8 689 aa16.25■□□□□ 0.19
VPS54-201ENST00000272322 CNOT11Q9UKZ1 510 aaKnown RBP16.25■□□□□ 0.19
VPS54-201ENST00000272322 SDK1Q7Z5N4 2213 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 G3V2T6 193 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 MANBAO00462 879 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 TGM5O43548 720 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 ANXA5P08758 320 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 SRCP12931 536 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 ZNF182P17025 639 aaPredicted RBP16.24■□□□□ 0.19
VPS54-201ENST00000272322 B4GALNT1Q00973 533 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 PTSQ03393 145 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 RAB39AQ14964 217 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 CYP27C1Q4G0S4 372 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 OR7A2PQ8NGA2 310 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 PXYLP1Q8TE99 480 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 ELMO1Q92556 727 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 ISOC1Q96CN7 298 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 P2RY13Q9BPV8 354 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 BRD9Q9H8M2 597 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 TMEM39AQ9NV64 488 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 PKD2L2Q9NZM6 624 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 F5P12259 2224 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 AREL1O15033 823 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 XPNPEP2O43895 674 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 DEAF1O75398 565 aaPredicted RBP16.24■□□□□ 0.19
VPS54-201ENST00000272322 ETV3P41162 512 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 NKX3-2P78367 333 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 PWP1Q13610 501 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 ASTLQ6HA08 431 aaPredicted RBP16.24■□□□□ 0.19
VPS54-201ENST00000272322 DOK6Q6PKX4 331 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 TMEM179BQ7Z7N9 219 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 CCDC138Q96M89 665 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 SLC46A2Q9BY10 475 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 ITM2BQ9Y287 266 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 PCDHB1Q9Y5F3 818 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 ZNF821O75541 412 aaPredicted RBP16.24■□□□□ 0.19
VPS54-201ENST00000272322 FKBP9O95302 570 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 GPRC6AQ5T6X5 926 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 SULT1C3Q6IMI6 304 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 CERS6Q6ZMG9 384 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 FKBP9P1Q75LS8 142 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 MSRB3Q8IXL7 192 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 C2orf15Q8WU43 125 aaKnown RBP16.24■□□□□ 0.19
VPS54-201ENST00000272322 EZH1Q92800 747 aaPredicted RBP16.24■□□□□ 0.19
VPS54-201ENST00000272322 SLC47A1Q96FL8 570 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 PPP3R2Q96LZ3 170 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 IL21Q9HBE4 155 aa16.24■□□□□ 0.19
VPS54-201ENST00000272322 NINQ8N4C6 2090 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 ELOVL7A1L3X0 281 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 CXCR6O00574 342 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 ANKRD28O15084 1053 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 CLDN9O95484 217 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 S100A3P33764 101 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 DGKEP52429 567 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 EEFSECP57772 596 aaKnown RBP16.23■□□□□ 0.19
VPS54-201ENST00000272322 AP1S1P61966 158 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 PCBP2Q15366 365 aaKnown RBP eCLIP16.23■□□□□ 0.19
VPS54-201ENST00000272322 ZCCHC8Q6NZY4 707 aaKnown RBP16.23■□□□□ 0.19
VPS54-201ENST00000272322 NEK5Q6P3R8 708 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 SLC43A3Q8NBI5 491 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 SEZ6LQ9BYH1 1024 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 PAIP1Q9H074 479 aaKnown RBP16.23■□□□□ 0.19
VPS54-201ENST00000272322 ETAA1Q9NY74 926 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 RIMKLBQ9ULI2 386 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 J3QRK9 145 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 PLK4O00444 970 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 XYLBO75191 536 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 FTH1P02794 183 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 CCR2P41597 374 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 CCDC81Q6ZN84 652 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 VTCN1Q7Z7D3 282 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 MIPOL1Q8TD10 442 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 FBXL8Q96CD0 374 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 TPD52L3Q96J77 140 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 WRAP53Q9BUR4 548 aaKnown RBP16.23■□□□□ 0.19
VPS54-201ENST00000272322 SUV39H2Q9H5I1 410 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 GALNT8Q9NY28 637 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 PCDHGA11Q9Y5H2 935 aa16.23■□□□□ 0.19
VPS54-201ENST00000272322 C8AP07357 584 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 RPS6KA3P51812 740 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 CHIT1Q13231 466 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 INTS11Q5TA45 600 aaKnown RBP16.22■□□□□ 0.19
VPS54-201ENST00000272322 CES5AQ6NT32 575 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 CLECL1Q8IZS7 167 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 OSCP1Q8WVF1 389 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 TMEM175Q9BSA9 504 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 PNMA8BQ9ULN7 279 aaPredicted RBP16.22■□□□□ 0.19
VPS54-201ENST00000272322 TRIOO75962 3097 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 REV3LO60673 3130 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms