RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 RPS14P62263 151 aaKnown RBP11.33□□□□□ -0.6
VPS33A-201ENST00000267199 TBC1D25Q3MII6 688 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 FOXB2Q5VYV0 432 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 TRIM40Q6P9F5 258 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 CILP2Q8IUL8 1156 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 C2CD4AQ8NCU7 369 aaPredicted RBP11.33□□□□□ -0.6
VPS33A-201ENST00000267199 REPS1Q96D71 796 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 SLC2A13Q96QE2 648 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 AARSD1Q9BTE6 412 aaKnown RBP11.33□□□□□ -0.6
VPS33A-201ENST00000267199 C1orf109Q9NX04 203 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 PCDHB3Q9Y5E6 796 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 ACOX3O15254 700 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 PGRP06401 933 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 PFKMP08237 780 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 SPATA31D3P0C874 917 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 PCSK6P29122 969 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 PTGER3P43115 390 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 SEMG2Q02383 582 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 RFTN1Q14699 578 aaPredicted RBP11.33□□□□□ -0.6
VPS33A-201ENST00000267199 ANKDD1AQ495B1 522 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 TRNP1Q6NT89 227 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 ZNF517Q6ZMY9 492 aaPredicted RBP11.33□□□□□ -0.6
VPS33A-201ENST00000267199 SPATA31D4Q6ZUB0 917 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 AURKBQ96GD4 344 aaPredicted RBP11.33□□□□□ -0.6
VPS33A-201ENST00000267199 NEK6Q9HC98 313 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 INTS7Q9NVH2 962 aaKnown RBP11.33□□□□□ -0.6
VPS33A-201ENST00000267199 POLR3BQ9NW08 1133 aaPredicted RBP11.33□□□□□ -0.6
VPS33A-201ENST00000267199 C14orf119Q9NWQ9 140 aa11.33□□□□□ -0.6
VPS33A-201ENST00000267199 HTR3EA5X5Y0 456 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ALDH1A2O94788 518 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ZBTB48P10074 688 aaPredicted RBP11.32□□□□□ -0.6
VPS33A-201ENST00000267199 OPRL1P41146 370 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 BUD31P41223 144 aaPredicted RBP11.32□□□□□ -0.6
VPS33A-201ENST00000267199 CREB5Q02930 508 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ZNF33AQ06730 810 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 TUBA3CQ13748 450 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ATXN7L2Q5T6C5 722 aaPredicted RBP11.32□□□□□ -0.6
VPS33A-201ENST00000267199 LYPLAL1Q5VWZ2 237 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 PRR23CQ6ZRP0 262 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ZBTB2Q8N680 514 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ABHD11Q8NFV4 315 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 UPF1Q92900 1129 aaKnown RBP eCLIP11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ZUFSPQ96AP4 578 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 SIPA1Q96FS4 1042 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ZBED3Q96IU2 234 aaPredicted RBP11.32□□□□□ -0.6
VPS33A-201ENST00000267199 POLR2J2Q9GZM3 115 aaKnown RBP11.32□□□□□ -0.6
VPS33A-201ENST00000267199 BRD9Q9H8M2 597 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 TMEM138Q9NPI0 162 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 KCTD5Q9NXV2 234 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 KCNE2Q9Y6J6 123 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 BCORQ6W2J9 1755 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 CLDN9O95484 217 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 GSTT2P0CG29 244 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 GSTT2BP0CG30 244 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 GABRR2P28476 465 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 TAF1AQ15573 450 aaPredicted RBP11.32□□□□□ -0.6
VPS33A-201ENST00000267199 SPANXN4Q5MJ08 99 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 USP30Q70CQ3 517 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 OR8H3Q8N146 312 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 SHKBP1Q8TBC3 707 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 CEP295NLQ96MC4 621 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ZNF558Q96NG5 402 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 FNDC11Q9BVV2 318 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 TIGARQ9NQ88 270 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 TBC1D14Q9P2M4 693 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ERVK-18Q9QC07 812 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 DOCK2Q92608 1830 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 TPST2O60704 377 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ATE1O95260 518 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 OXSR1O95747 527 aaPredicted RBP11.32□□□□□ -0.6
VPS33A-201ENST00000267199 POLR2EP19388 210 aaKnown RBP11.32□□□□□ -0.6
VPS33A-201ENST00000267199 KCNQ1P51787 676 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 LCN1P1Q5VSP4 162 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 ANKLE1Q8NAG6 615 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 C11orf65Q8NCR3 313 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 PYCR2Q96C36 320 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 SUSD3Q96L08 255 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 NAA50Q9GZZ1 169 aaKnown RBP11.32□□□□□ -0.6
VPS33A-201ENST00000267199 MED28Q9H204 178 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 TNKS2Q9H2K2 1166 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 CTPS2Q9NRF8 586 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 GKN1Q9NS71 199 aa11.32□□□□□ -0.6
VPS33A-201ENST00000267199 A0A0U1RQF3 1178 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 MEIS3P2A8K0S8 358 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 A8MU76 341 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 SYN3O14994 580 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 KERAO60938 352 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 RASAL1O95294 804 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 VARSP26640 1264 aaKnown RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 GDF5P43026 501 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 NCS1P62166 190 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 GANABQ14697 944 aaKnown RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 SNAPC1Q16533 368 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 GDF6Q6KF10 455 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 PRSS55Q6UWB4 352 aaPredicted RBP11.31□□□□□ -0.6
VPS33A-201ENST00000267199 CDK20Q8IZL9 346 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 KAT2AQ92830 837 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 COL26A1Q96A83 441 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 CORO1BQ9BR76 489 aa11.31□□□□□ -0.6
VPS33A-201ENST00000267199 OSBPL10Q9BXB5 764 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms