RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ULK2Q8IYT8 1036 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 SLC22A15Q8IZD6 547 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 CPSF7Q8N684 471 aaKnown RBP16.06■□□□□ 0.16
USP4-201ENST00000265560 OR5AR1Q8NGP9 310 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 COX14Q96I36 57 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 ZNF490Q9ULM2 529 aaPredicted RBP16.06■□□□□ 0.16
USP4-201ENST00000265560 ASF1AQ9Y294 204 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 PRAMEF33A0A0G2JMD5 474 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 NR5A2O00482 541 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 TCN1P20061 433 aaPredicted RBP16.06■□□□□ 0.16
USP4-201ENST00000265560 COL9A2Q14055 689 aaPredicted RBP16.06■□□□□ 0.16
USP4-201ENST00000265560 MMEL1Q495T6 779 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 VPS26BQ4G0F5 336 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 ANO7Q6IWH7 933 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 AMZ2Q86W34 360 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 TP53I13Q8NBR0 393 aaPredicted RBP16.06■□□□□ 0.16
USP4-201ENST00000265560 FAM156AQ8NDB6 213 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 RLN3Q8WXF3 142 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 VPS33AQ96AX1 596 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 STOX2Q9P2F5 926 aaPredicted RBP16.06■□□□□ 0.16
USP4-201ENST00000265560 KLHL42Q9P2K6 505 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 SLC7A8Q9UHI5 535 aa16.06■□□□□ 0.16
USP4-201ENST00000265560 A0A088AWK7 358 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 PLRG1O43660 514 aaKnown RBP16.05■□□□□ 0.16
USP4-201ENST00000265560 PSIP1O75475 530 aaKnown RBP16.05■□□□□ 0.16
USP4-201ENST00000265560 IGFALSP35858 605 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 TPMTP51580 245 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 TTC31Q49AM3 519 aaPredicted RBP16.05■□□□□ 0.16
USP4-201ENST00000265560 C6orf136Q5SQH8 315 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 SCUBE1Q8IWY4 988 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 DSELQ8IZU8 1212 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 OR4K3Q96R72 315 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 SH2B3Q9UQQ2 575 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 NPC1O15118 1278 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 AP1G1O43747 822 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 CATP04040 527 aaKnown RBP16.05■□□□□ 0.16
USP4-201ENST00000265560 IMPA1P29218 277 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 UFM1P61960 85 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 SF1Q15637 639 aaKnown RBP16.05■□□□□ 0.16
USP4-201ENST00000265560 ZNF658BQ4V348 819 aaPredicted RBP16.05■□□□□ 0.16
USP4-201ENST00000265560 PTCRAQ6ISU1 281 aaPredicted RBP16.05■□□□□ 0.16
USP4-201ENST00000265560 FAM160A2Q8N612 972 aaPredicted RBP16.05■□□□□ 0.16
USP4-201ENST00000265560 GLMNQ92990 594 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 FOPNLQ96NB1 174 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 TMCO1Q9UM00 188 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 QSOX1O00391 747 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 FBP2O00757 339 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 HNRNPCL1O60812 293 aaKnown RBP16.05■□□□□ 0.16
USP4-201ENST00000265560 C1orf105O95561 183 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 GABRG2P18507 467 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 CASP2P42575 452 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 DPP6P42658 865 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 STX1BP61266 288 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 CHIT1Q13231 466 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 ADAMTSL4Q6UY14 1074 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 CLHC1Q8NHS4 586 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 HLA-CQ95604 372 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 C1QTNF2Q9BXJ5 285 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 C8orf33Q9H7E9 229 aaPredicted RBP16.05■□□□□ 0.16
USP4-201ENST00000265560 NKX1-2Q9UD57 310 aaPredicted RBP16.05■□□□□ 0.16
USP4-201ENST00000265560 EBF1Q9UH73 591 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 WDR37Q9Y2I8 494 aa16.05■□□□□ 0.16
USP4-201ENST00000265560 E7EQ34 232 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 ULK1O75385 1050 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 SLC2A4P14672 509 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 SOX11P35716 441 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 MEF2AQ02078 507 aaPredicted RBP16.04■□□□□ 0.16
USP4-201ENST00000265560 TBL3Q12788 808 aaKnown RBP16.04■□□□□ 0.16
USP4-201ENST00000265560 ART3Q13508 389 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 AP5B1Q2VPB7 878 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 TMEM259Q4ZIN3 620 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 TPRG1LQ5T0D9 272 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 THOC6Q86W42 341 aaKnown RBP16.04■□□□□ 0.16
USP4-201ENST00000265560 HORMAD1Q86X24 394 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 SUGP1Q8IWZ8 645 aaKnown RBP16.04■□□□□ 0.16
USP4-201ENST00000265560 DEFB119Q8N690 84 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 OR2L2Q8NH16 312 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 RP9Q8TA86 221 aaKnown RBP16.04■□□□□ 0.16
USP4-201ENST00000265560 ZNF480Q8WV37 535 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 GPSM3Q9Y4H4 160 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 MGAT4DA6NG13 374 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 CLDN9O95484 217 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 FOSL2P15408 326 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 GPX3P22352 226 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 SLC6A12P48065 614 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 CLCNKAP51800 687 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 RPL38P63173 70 aaKnown RBP16.04■□□□□ 0.16
USP4-201ENST00000265560 SQLEQ14534 574 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 BCL7AQ4VC05 210 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 ATP6AP1LQ52LC2 224 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 XKR7Q5GH72 579 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 LRRTM4Q86VH4 590 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 CDRT15Q96T59 188 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 MTERF1Q99551 399 aaKnown RBP16.04■□□□□ 0.16
USP4-201ENST00000265560 GMPR2Q9P2T1 348 aaKnown RBP16.04■□□□□ 0.16
USP4-201ENST00000265560 ST14Q9Y5Y6 855 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 ZDBF2Q9HCK1 2354 aa16.04■□□□□ 0.16
USP4-201ENST00000265560 PDYNP01213 254 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 CD22P20273 847 aa16.03■□□□□ 0.16
USP4-201ENST00000265560 VARSP26640 1264 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms