RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 AURKCQ9UQB9 309 aa12.62□□□□□ -0.39
SPTLC1-201ENST00000262554 AP4B1Q9Y6B7 739 aa12.62□□□□□ -0.39
SPTLC1-201ENST00000262554 PRRC2BQ5JSZ5 2229 aaKnown RBP12.62□□□□□ -0.39
SPTLC1-201ENST00000262554 KANSL1LA0AUZ9 987 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 H0Y858 1186 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 H0YJX3 145 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 TIPRLO75663 272 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 RSL1D1O76021 490 aaKnown RBP12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 KCNH1O95259 989 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 GPIP06744 558 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 CA3P07451 260 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 GSTM1P09488 218 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 PIM1P11309 404 aaPredicted RBP12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 HTR1EP28566 365 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 MLLT3P42568 568 aaPredicted RBP12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 CHN2P52757 468 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 GSTM4Q03013 218 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 KCNC3Q14003 757 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 PTGR1Q14914 329 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 FAM78AQ5JUQ0 283 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 DLEU7Q6UYE1 221 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 ERMP1Q7Z2K6 904 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 PROSER1Q86XN7 944 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 ST13P4Q8IZP2 240 aaPredicted RBP12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 RASGEF1AQ8N9B8 481 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 L3MBTL4Q8NA19 623 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 SLC13A3Q8WWT9 602 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 OR8D1Q8WZ84 308 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 NXPE3Q969Y0 559 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 FBXL8Q96CD0 374 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 SAMD11Q96NU1 681 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 CGREF1Q99674 301 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 FAM83CQ9BQN1 747 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 CCM2Q9BSQ5 444 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 WRAP53Q9BUR4 548 aaKnown RBP12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 DEC1Q9P2X7 70 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 FAM8A1Q9UBU6 413 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 C2orf16Q68DN1 1984 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 LAMA2P24043 3122 aaKnown RBP12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 KCNE1BA0A087WTH5 132 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 EDDM13A0A1B0GTR0 161 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 PRRT4C9JH25 899 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 TSPAN6O43657 245 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 IL6P05231 212 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 LINGO3P0C6S8 592 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 BMP2P12643 396 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 ZNF26P17031 533 aaPredicted RBP12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 ITGB7P26010 798 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 MAPK9P45984 424 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 SLC6A11P48066 632 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 PRLHRP49683 370 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 TMEM115Q12893 351 aaPredicted RBP12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 KIAA0040Q15053 153 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 ZXDCQ2QGD7 858 aaPredicted RBP12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 MTX3Q5HYI7 312 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 HMBOX1Q6NT76 420 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 AMIGO2Q86SJ2 522 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 RASGRP3Q8IV61 690 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 FAM9CQ8IZT9 166 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 ANKFN1Q8N957 763 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 TMIEQ8NEW7 156 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 ATL1Q8WXF7 558 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 SMARCD2Q92925 531 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 GLMNQ92990 594 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 PYCR2Q96C36 320 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 ZFYVE19Q96K21 471 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 PPM1MQ96MI6 270 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 ASB16Q96NS5 453 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 ACPTQ9BZG2 426 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 COQ10BQ9H8M1 238 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 SLC22A14Q9Y267 594 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 ITM2BQ9Y287 266 aa12.61□□□□□ -0.39
SPTLC1-201ENST00000262554 LRRK1Q38SD2 2015 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 GRXCR1A8MXD5 290 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 INPP4BO15327 924 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 PSIP1O75475 530 aaKnown RBP12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 UMPSP11172 480 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 MTHFD1P11586 935 aaKnown RBP12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 PCSK2P16519 638 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 ITPKAP23677 461 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 MAPK1P28482 360 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 HALP42357 657 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 ELP6Q0PNE2 266 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 ABRQ12979 859 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 GRM2Q14416 872 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 EIF4HQ15056 248 aaKnown RBP12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 MAPKAPK3Q16644 382 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 CYP51A1Q16850 503 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 HNRNPA1L2Q32P51 320 aaKnown RBP12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 FAM174BQ3ZCQ3 159 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 USP39Q53GS9 565 aaKnown RBP12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 C9orf64Q5T6V5 341 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 NEK5Q6P3R8 708 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 UGT2A3Q6UWM9 527 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 CYP2U1Q7Z449 544 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 NPAS3Q8IXF0 933 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 OR8J3Q8NGG0 315 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 DTD2Q96FN9 168 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 COQ10AQ96MF6 247 aa12.6□□□□□ -0.39
SPTLC1-201ENST00000262554 ATG10Q9H0Y0 220 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms