RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ATP6V1G2O95670 118 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 CD9P21926 228 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 UGT1A4P22310 534 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 KCNA5P22460 613 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 UGT1A3P35503 534 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 UGT1A5P35504 534 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 TRAF2Q12933 501 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 KRR1Q13601 381 aaKnown RBP13.35□□□□□ -0.27
LDLR-201ENST00000252444 LIMS2Q7Z4I7 341 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 HIPK1Q86Z02 1210 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 KIAA2013Q8IYS2 634 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 MTFMTQ96DP5 389 aaKnown RBP13.35□□□□□ -0.27
LDLR-201ENST00000252444 SLC46A2Q9BY10 475 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 BCAS2O75934 225 aaPredicted RBP13.35□□□□□ -0.27
LDLR-201ENST00000252444 PSMG1O95456 288 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 MYCLP1P12525 358 aaPredicted RBP13.35□□□□□ -0.27
LDLR-201ENST00000252444 PAICSP22234 425 aaKnown RBP13.35□□□□□ -0.27
LDLR-201ENST00000252444 EMX2Q04743 252 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 FRMD7Q6ZUT3 714 aa13.35□□□□□ -0.27
LDLR-201ENST00000252444 RTN4RL1Q86UN2 441 aaPredicted RBP13.35□□□□□ -0.27
LDLR-201ENST00000252444 SUCOQ9UBS9 1254 aaKnown RBP13.35□□□□□ -0.27
LDLR-201ENST00000252444 DUX1O43812 170 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 CSNK2A2P19784 350 aaPredicted RBP13.34□□□□□ -0.27
LDLR-201ENST00000252444 GPAT3Q53EU6 434 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 IL23RQ5VWK5 629 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 EIF3MQ7L2H7 374 aaKnown RBP13.34□□□□□ -0.27
LDLR-201ENST00000252444 PHF21AQ96BD5 680 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 RMND5BQ96G75 393 aaPredicted RBP13.34□□□□□ -0.27
LDLR-201ENST00000252444 APOLD1Q96LR9 279 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 DUSP23Q9BVJ7 150 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 SCHIP1Q9P0W5 487 aaPredicted RBP13.34□□□□□ -0.27
LDLR-201ENST00000252444 SERTAD3Q9UJW9 196 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 KIR2DS5A0A0G2JLQ3 304 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 A0A0G2JNG1 304 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 TCRBV7S3A2A0A539 114 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 KIR2DS3K7RE56 304 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 E2F3O00716 465 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 RFPL2O75678 378 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 S1PR4O95977 384 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 CCNYL3P0C7X3 344 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 C6P13671 934 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 CPN2P22792 545 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 SP100P23497 879 aaPredicted RBP13.34□□□□□ -0.27
LDLR-201ENST00000252444 KIR2DS5Q14953 304 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 TIMM50Q3ZCQ8 353 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 COQ5Q5HYK3 327 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 AGTRAPQ6RW13 159 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 ARHGAP36Q6ZRI8 547 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 ZNF614Q8N883 585 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 SH3GL3Q99963 347 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 MANBAO00462 879 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 CD70P32970 193 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 RIPK1Q13546 671 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 GK3PQ14409 553 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 PIGWQ7Z7B1 504 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 RIBC2Q9H4K1 309 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 GRXCR2A6NFK2 248 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 NIPSNAP2O75323 286 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 IFNGP01579 166 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 ADARP55265 1226 aaKnown RBP13.34□□□□□ -0.27
LDLR-201ENST00000252444 SLC10A2Q12908 348 aaPredicted RBP13.34□□□□□ -0.27
LDLR-201ENST00000252444 TCEAL5Q5H9L2 206 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 RANBP3LQ86VV4 465 aaPredicted RBP13.34□□□□□ -0.27
LDLR-201ENST00000252444 ARHGAP12Q8IWW6 846 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 GPR156Q8NFN8 814 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 FBXL8Q96CD0 374 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 SLC17A9Q9BYT1 436 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 TMEM27Q9HBJ8 222 aa13.34□□□□□ -0.27
LDLR-201ENST00000252444 SIN3BO75182 1162 aa13.33□□□□□ -0.27
LDLR-201ENST00000252444 SLC25A12O75746 678 aa13.33□□□□□ -0.27
LDLR-201ENST00000252444 OR4F21O95013 312 aa13.33□□□□□ -0.27
LDLR-201ENST00000252444 CLCNKAP51800 687 aa13.33□□□□□ -0.27
LDLR-201ENST00000252444 ACTR3P61158 418 aa13.33□□□□□ -0.27
LDLR-201ENST00000252444 DHRSXQ8N5I4 330 aa13.33□□□□□ -0.27
LDLR-201ENST00000252444 LRRN4Q8WUT4 740 aa13.33□□□□□ -0.27
LDLR-201ENST00000252444 L3HYPDHQ96EM0 354 aa13.33□□□□□ -0.27
LDLR-201ENST00000252444 DUSP12Q9UNI6 340 aa13.33□□□□□ -0.27
LDLR-201ENST00000252444 ENTPD5O75356 428 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 FAM155BO75949 473 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 TNFAIP8O95379 198 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 CASRP41180 1078 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 IDH3AP50213 366 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 TDGQ13569 410 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 PWP1Q13610 501 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 SLBPQ14493 270 aaKnown RBP eCLIP13.33□□□□□ -0.28
LDLR-201ENST00000252444 C9orf64Q5T6V5 341 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 IRGCQ6NXR0 463 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 CDC73Q6P1J9 531 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 IKBIPQ70UQ0 350 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 CLNKQ7Z7G1 428 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 LMLNQ96KR4 655 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 NDC1Q9BTX1 674 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 DDX18Q9NVP1 670 aaKnown RBP13.33□□□□□ -0.28
LDLR-201ENST00000252444 ANKMY1Q9P2S6 941 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 LRCH1Q9Y2L9 728 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 C17orf113A0A1B0GUU1 675 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 A0A1W2PQU0 124 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 PCDH7O60245 1069 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 IGLV3-27P01718 113 aa13.33□□□□□ -0.28
LDLR-201ENST00000252444 RPSAP08865 295 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 143.7 ms