RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 SNX4O95219 450 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 HMGN1P05114 100 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 CDH1P12830 882 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 SLC13A2Q13183 592 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 DAG1Q14118 895 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 IQCCQ4KMZ1 466 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 CRTC2Q53ET0 693 aaPredicted RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 NCBP2-AS2Q69YL0 99 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 PRR23BQ6ZRT6 265 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 STX12Q86Y82 276 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 PACRGLQ8N7B6 248 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 OR10H4Q8NGA5 316 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 CRELD1Q96HD1 420 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 ZSWIM3Q96MP5 696 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 GAS2L1Q99501 681 aaPredicted RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 C11orf84Q9BUA3 381 aaPredicted RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 IFT27Q9BW83 186 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 ZNF99A8MXY4 864 aaPredicted RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 ORC5O43913 435 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 HLA-DQB2P05538 268 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 CSNK2A2P19784 350 aaPredicted RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 DNAJB1P25685 340 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 GNALP38405 381 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 CSKP41240 450 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 NFKB2Q00653 900 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 SLC9B1Q4ZJI4 515 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 ACSBG2Q5FVE4 666 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 XKR4Q5GH76 650 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 PITRM1Q5JRX3 1037 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 NANOGNBQ7Z5D8 188 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 SIX5Q8N196 739 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 ZNF516Q92618 1163 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 OR51V1Q9H2C8 321 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 HSD3B7Q9H2F3 369 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 ZIM2Q9NZV7 527 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 PHF24Q9UPV7 400 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 AZGP1P25311 298 aaKnown RBP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 ITGA3P26006 1051 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 CLCN7P51798 805 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 MERTKQ12866 999 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 UBAP2Q5T6F2 1119 aaKnown RBP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 GPR153Q6NV75 609 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 GPR151Q8TDV0 419 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 PIGKQ92643 395 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 TBC1D17Q9HA65 648 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 SLC7A8Q9UHI5 535 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 FAM159BA6NKW6 160 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 MATN2O00339 956 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 PDCD5O14737 125 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 AGR2O95994 175 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 SERPINA3P01011 423 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 IL1R2P27930 398 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 CCR8P51685 355 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 MXD1Q05195 221 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 CWF19L1Q69YN2 538 aaKnown RBP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 FBXL22Q6P050 247 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 TNFAIP8L2Q6P589 184 aaPredicted RBP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 GPALPP1Q8IXQ4 340 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 ATP6V1C2Q8NEY4 427 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 MGME1Q9BQP7 344 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 YTHDF1Q9BYJ9 559 aaKnown RBP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 EBF3Q9H4W6 596 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 PIGVQ9NUD9 493 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 KIF1AQ12756 1690 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 NEMP2A6NFY4 417 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 ANXA2P2A6NMY6 339 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 ANXA2P07355 339 aaKnown RBP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 NR4A1P22736 598 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 S100A1P23297 94 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 QSOX2Q6ZRP7 698 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 LRRC70Q7Z2Q7 622 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 SUSD3Q96L08 255 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 POLR2J2Q9GZM3 115 aaKnown RBP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 TTYH1Q9H313 450 aaPredicted RBP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 SLC32A1Q9H598 525 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 TCF7L1Q9HCS4 588 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 MKKSQ9NPJ1 570 aaPredicted RBP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 PAK6Q9NQU5 681 aaPredicted RBP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 FLRT1Q9NZU1 646 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 HCN3Q9P1Z3 774 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 RBPJLQ9UBG7 517 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 TEX46H3BTG2 121 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 HAS3O00219 553 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 EI24O14681 340 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 PEX10O60683 326 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 NIPSNAP2O75323 286 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 CYB5AP00167 134 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 ATP5A1P25705 553 aaKnown RBP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 RAB15P59190 212 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 GRSF1Q12849 480 aaKnown RBP eCLIP13.29□□□□□ -0.28
SF3A1-201ENST00000215793 BRAT1Q6PJG6 821 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 SMARCD3Q6STE5 483 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 USP43Q70EL4 1123 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 GALNT7Q86SF2 657 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 SH3RF2Q8TEC5 729 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 ZSCAN5AQ9BUG6 496 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 ADAP2Q9NPF8 381 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 RIMBP3CA6NJZ7 1639 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 RIMBP3BA6NNM3 1639 aa13.29□□□□□ -0.28
SF3A1-201ENST00000215793 RIMBP3Q9UFD9 1639 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms