RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 HGH1Q9BTY7 390 aa17.83■□□□□ 0.45
CLN3-241ENST00000635861 SMARCAL1Q9NZC9 954 aa17.83■□□□□ 0.45
CLN3-241ENST00000635861 OR6C2Q9NZP2 312 aa17.83■□□□□ 0.45
CLN3-241ENST00000635861 RIMKLBQ9ULI2 386 aa17.83■□□□□ 0.45
CLN3-241ENST00000635861 VPS4AQ9UN37 437 aa17.83■□□□□ 0.45
CLN3-241ENST00000635861 ICE1Q9Y2F5 2266 aa17.83■□□□□ 0.44
CLN3-241ENST00000635861 DPM1O60762 260 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 GAS8O95995 478 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 STIP1P31948 543 aaKnown RBP17.82■□□□□ 0.44
CLN3-241ENST00000635861 LMAN1P49257 510 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 RAD9BQ6WBX8 426 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 CDHR3Q6ZTQ4 885 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 KIAA1328Q86T90 577 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 PIANPQ8IYJ0 282 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 C19orf47Q8N9M1 422 aaKnown RBP17.82■□□□□ 0.44
CLN3-241ENST00000635861 GLIS1Q8NBF1 620 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 OR5K2Q8NHB8 316 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 CPT1CQ8TCG5 803 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 N4BP2L2Q92802 583 aaPredicted RBP17.82■□□□□ 0.44
CLN3-241ENST00000635861 ICKQ9UPZ9 632 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 ASF1AQ9Y294 204 aa17.82■□□□□ 0.44
CLN3-241ENST00000635861 ZNF749O43361 778 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 KLHL41O60662 606 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 SORBS2O94875 1100 aaKnown RBP17.81■□□□□ 0.44
CLN3-241ENST00000635861 IGHEP01854 428 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 OR56A5P0C7T3 313 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 TPH1P17752 444 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 ACADLP28330 430 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 KIF5AQ12840 1032 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 CDH17Q12864 832 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 PRKG2Q13237 762 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 PRAMEF17Q5VTA0 474 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 ZNF385CQ66K41 422 aaPredicted RBP17.81■□□□□ 0.44
CLN3-241ENST00000635861 LCN10Q6JVE6 187 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 PROKR1Q8TCW9 393 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 ELMO1Q92556 727 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 FRMD8P1Q9BZ68 369 aaPredicted RBP17.81■□□□□ 0.44
CLN3-241ENST00000635861 HIVEP3Q5T1R4 2406 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 SLC5A10A0PJK1 596 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 HEATR9A2RTY3 570 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 FOXN2P32314 431 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 GDF10P55107 478 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 CHAF1BQ13112 559 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 RHBDD2Q6NTF9 364 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 UNC5AQ6ZN44 842 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 ACRBPQ8NEB7 543 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 OR5AR1Q8NGP9 310 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 PEX13Q92968 403 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 RANBP9Q96S59 729 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 TMEM121Q9BTD3 319 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 C5AR2Q9P296 337 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 SRPK3Q9UPE1 567 aa17.81■□□□□ 0.44
CLN3-241ENST00000635861 A0A0J9YY10 115 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 H3BMH7 237 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 DDX3YO15523 660 aaKnown RBP17.8■□□□□ 0.44
CLN3-241ENST00000635861 OR2B3O76000 313 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 CHRM5P08912 532 aaPredicted RBP17.8■□□□□ 0.44
CLN3-241ENST00000635861 PRSS56P0CW18 603 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 UGT2B7P16662 529 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 PPARGP37231 505 aaPredicted RBP17.8■□□□□ 0.44
CLN3-241ENST00000635861 KIR2DS3Q14952 304 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 SLC5A12Q1EHB4 618 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 SYTL3Q4VX76 610 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 TLDC1Q6P9B6 456 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 AFTPHQ6ULP2 937 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 NLRP9Q7RTR0 991 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 ZBTB2Q8N680 514 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 SGSM3Q96HU1 749 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 HES6Q96HZ4 224 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 PSMG3-AS1Q96PY0 264 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 OR2A14Q96R47 310 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 SMAD5Q99717 465 aaKnown RBP17.8■□□□□ 0.44
CLN3-241ENST00000635861 BAG1Q99933 345 aaPredicted RBP17.8■□□□□ 0.44
CLN3-241ENST00000635861 TSSK1BQ9BXA7 367 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 XKR8Q9H6D3 395 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 GPR83Q9NYM4 423 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 IMPACTQ9P2X3 320 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 MAP4K5Q9Y4K4 846 aa17.8■□□□□ 0.44
CLN3-241ENST00000635861 DOCK10Q96BY6 2186 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 SUN1O94901 812 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 PVRP15151 417 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 FDFT1P37268 417 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 GABRA4P48169 554 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 SSPNQ14714 243 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 PTCHD3Q3KNS1 767 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 NADK2Q4G0N4 442 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 DNAJC21Q5F1R6 531 aaKnown RBP17.79■□□□□ 0.44
CLN3-241ENST00000635861 DNAAF3Q8N9W5 541 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 FDCSPQ8NFU4 85 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 FER1L6-AS2Q96M78 137 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 AP1M1Q9BXS5 423 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 GPN3Q9UHW5 284 aaPredicted RBP17.79■□□□□ 0.44
CLN3-241ENST00000635861 PRSS21Q9Y6M0 314 aa17.79■□□□□ 0.44
CLN3-241ENST00000635861 CCDC78A2IDD5 438 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 RPN2P04844 631 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 ACVR1Q04771 509 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 OR52K1Q8NGK4 314 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 OR13J1Q8NGT2 312 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 FLVCR1-AS1Q8TAF5 88 aa17.78■□□□□ 0.44
CLN3-241ENST00000635861 DENND1AQ8TEH3 1009 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms