RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 SGF29Q96ES7 293 aa11.45□□□□□ -0.58
VRK3-223ENST00000601341 HIC2Q96JB3 615 aa11.45□□□□□ -0.58
VRK3-223ENST00000601341 C1QTNF3Q9BXJ4 246 aa11.45□□□□□ -0.58
VRK3-223ENST00000601341 DERL2Q9GZP9 239 aa11.45□□□□□ -0.58
VRK3-223ENST00000601341 CHRDQ9H2X0 955 aa11.45□□□□□ -0.58
VRK3-223ENST00000601341 TRIM39Q9HCM9 518 aa11.45□□□□□ -0.58
VRK3-223ENST00000601341 LATS2Q9NRM7 1088 aa11.45□□□□□ -0.58
VRK3-223ENST00000601341 SIT1Q9Y3P8 196 aa11.45□□□□□ -0.58
VRK3-223ENST00000601341 PCDHGA7Q9Y5G6 932 aa11.45□□□□□ -0.58
VRK3-223ENST00000601341 TRIOO75962 3097 aa11.45□□□□□ -0.58
VRK3-223ENST00000601341 KPNA5O15131 536 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 ZNF217O75362 1048 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 CDK14O94921 469 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 FTH1P02794 183 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 PCCBP05166 539 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 OXTRP30559 389 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 STX1BP61266 288 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 RHDQ02161 417 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 FGL2Q14314 439 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 GRAMD1BQ3KR37 738 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 TTLL9Q3SXZ7 439 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 UGT3A2Q3SY77 523 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 LPCAT4Q643R3 524 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 EFL1Q7Z2Z2 1120 aaKnown RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 TRIM69Q86WT6 500 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 CHCHD4Q8N4Q1 142 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 ZBTB2Q8N680 514 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 PLA2G15Q8NCC3 412 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 NAT14Q8WUY8 206 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 KLK6Q92876 244 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 KIAA1191Q96A73 305 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 C19orf60Q96EN9 201 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 PDLIM5Q96HC4 596 aaKnown RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 ZNF514Q96K75 400 aaPredicted RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 SLC30A3Q99726 388 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 CCT7Q99832 543 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 EPHX3Q9H6B9 360 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 CD320Q9NPF0 282 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 PFDN4Q9NQP4 134 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 C2orf42Q9NWW7 574 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 PLXNA2O75051 1894 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 SMIM31A0A1B0GVY4 71 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 DYTNA2CJ06 578 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 NEMP2A6NFY4 417 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 SYCE1LA8MT33 242 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 TMEM233B4DJY2 109 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 VEGFDO43915 354 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 NRP2O60462 931 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 SKAP2O75563 359 aaPredicted RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 MATN4O95460 622 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 SEMA4FO95754 770 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 PABPC4LP0CB38 370 aaKnown RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 ITGB6P18564 788 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 DGKAP23743 735 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 TRIM23P36406 574 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 DPP6P42658 865 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 RGS4P49798 205 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 ZXDAP98168 799 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 FOLH1Q04609 750 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 INPP5AQ14642 412 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 PDK3Q15120 406 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 IRF4Q15306 451 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 UNC50Q53HI1 259 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 ZNF648Q5T619 568 aaPredicted RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 HEATR4Q86WZ0 1026 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 GALNT15Q8N3T1 639 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 RASGEF1AQ8N9B8 481 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 TP53I13Q8NBR0 393 aaPredicted RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 BHLHE22Q8NFJ8 381 aaPredicted RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 STAG3L4Q8TBR4 150 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 LKAAEAR1Q8TD35 194 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 EEF1AKMT1Q8WVE0 214 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 NCSTNQ92542 709 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 MOCOSQ96EN8 888 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 COX14Q96I36 57 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 HHIPQ96QV1 700 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 UHRF1Q96T88 793 aaPredicted RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 HOPXQ9BPY8 73 aaPredicted RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 EFHD1Q9BUP0 239 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 TEX101Q9BY14 249 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 UNKQ9C0B0 810 aaKnown RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 YIPF3Q9GZM5 350 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 ALG9Q9H6U8 611 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 WDR26Q9H7D7 661 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 CD93Q9NPY3 652 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 MBNL1Q9NR56 388 aaKnown RBP11.44□□□□□ -0.58
VRK3-223ENST00000601341 TMEM181Q9P2C4 612 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 CD300AQ9UGN4 299 aa11.44□□□□□ -0.58
VRK3-223ENST00000601341 OR2AG2A6NM03 316 aa11.43□□□□□ -0.58
VRK3-223ENST00000601341 STX16-NPEPL1H3BU86 382 aa11.43□□□□□ -0.58
VRK3-223ENST00000601341 STX16O14662 325 aa11.43□□□□□ -0.58
VRK3-223ENST00000601341 KERAO60938 352 aa11.43□□□□□ -0.58
VRK3-223ENST00000601341 SUPT7LO94864 414 aa11.43□□□□□ -0.58
VRK3-223ENST00000601341 APBB3O95704 486 aa11.43□□□□□ -0.58
VRK3-223ENST00000601341 TSPAN12O95859 305 aa11.43□□□□□ -0.58
VRK3-223ENST00000601341 UBTFL6P0CB48 400 aaPredicted RBP11.43□□□□□ -0.58
VRK3-223ENST00000601341 CBSLP0DN79 551 aa11.43□□□□□ -0.58
VRK3-223ENST00000601341 MAT2AP31153 395 aaKnown RBP11.43□□□□□ -0.58
VRK3-223ENST00000601341 CBSP35520 551 aa11.43□□□□□ -0.58
VRK3-223ENST00000601341 PRLHRP49683 370 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms