RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 DOCK8Q8NF50 2099 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 KIF26AQ9ULI4 1882 aaPredicted RBP14.12□□□□□ -0.15
VRK3-217ENST00000599538 ZNF839A8K0R7 811 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 ARHGEF33A8MVX0 844 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 CLDN9O95484 217 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 PDYNP01213 254 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 HIST1H2AGP0C0S8 130 aaPredicted RBP14.12□□□□□ -0.15
VRK3-217ENST00000599538 UBTFL6P0CB48 400 aaPredicted RBP14.12□□□□□ -0.15
VRK3-217ENST00000599538 HIST1H2ADP20671 130 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 PBLDP30039 288 aaPredicted RBP14.12□□□□□ -0.15
VRK3-217ENST00000599538 CDKL1Q00532 357 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 KIAA0040Q15053 153 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 MAP7D1Q3KQU3 841 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 SUSD1Q6UWL2 747 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 VITQ6UXI7 678 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 TRIM46Q7Z4K8 759 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 DHFR2Q86XF0 187 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 TICAM1Q8IUC6 712 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 RASGRP3Q8IV61 690 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 ASZ1Q8WWH4 475 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 LRTOMTQ8WZ04 291 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 GATA6Q92908 595 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 CHFRQ96EP1 664 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 HIST1H2AHQ96KK5 128 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 HIST1H2AJQ99878 128 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 H2AFJQ9BTM1 129 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 PLA2G2FQ9BZM2 168 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 PIF1Q9H611 641 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 SFXN1Q9H9B4 322 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 LEF1Q9UJU2 399 aaPredicted RBP14.12□□□□□ -0.15
VRK3-217ENST00000599538 DTNAQ9Y4J8 743 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 AP4S1Q9Y587 144 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 CROCCQ5TZA2 2017 aa14.12□□□□□ -0.15
VRK3-217ENST00000599538 KCNE1BA0A087WTH5 132 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 RGS14O43566 566 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 MMP20O60882 483 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 RNASEH1O60930 286 aaKnown RBP14.11□□□□□ -0.15
VRK3-217ENST00000599538 RECQL5O94762 991 aaPredicted RBP14.11□□□□□ -0.15
VRK3-217ENST00000599538 PRNPP04156 253 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 ENO2P09104 434 aaPredicted RBP14.11□□□□□ -0.15
VRK3-217ENST00000599538 PFN3P60673 137 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 GRM2Q14416 872 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 NANOGP8Q6NSW7 305 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 METTL2BQ6P1Q9 378 aaKnown RBP14.11□□□□□ -0.15
VRK3-217ENST00000599538 FBXL19Q6PCT2 694 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 TMEM220Q6QAJ8 160 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 SPPL2CQ8IUH8 684 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 KRTCAP2Q8N6L1 136 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 CLHC1Q8NHS4 586 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 HCAR2Q8TDS4 363 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 CANT1Q8WVQ1 401 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 DTD2Q96FN9 168 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 PPP3R2Q96LZ3 170 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 SAMD11Q96NU1 681 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 VPS35Q96QK1 796 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 TRIM54Q9BYV2 358 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 TMEM245Q9H330 911 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 NANOGQ9H9S0 305 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 NEUROG3Q9Y4Z2 214 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 ATG2BQ96BY7 2078 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 LINC01565O15544 149 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 PEX1O43933 1283 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 SEC22BO75396 215 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 AP2A2O94973 939 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 FTH1P02794 183 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 MTHFD1P11586 935 aaKnown RBP14.11□□□□□ -0.15
VRK3-217ENST00000599538 HSD17B1P14061 328 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 OPRD1P41143 372 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 GSK3BP49841 420 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 SELPLGQ14242 412 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 CDKL4Q5MAI5 379 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 PRMT9Q6P2P2 845 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 TMEM154Q6P9G4 183 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 DLEU7Q6UYE1 221 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 LRRC70Q7Z2Q7 622 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 MMAAQ8IVH4 418 aaKnown RBP14.11□□□□□ -0.15
VRK3-217ENST00000599538 PLCD3Q8N3E9 789 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 LIX1Q8N485 282 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 TERB1Q8NA31 727 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 MCOLN3Q8TDD5 553 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 LRTM1Q9HBL6 345 aa14.11□□□□□ -0.15
VRK3-217ENST00000599538 TBC1D3BA6NDS4 549 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 AREL1O15033 823 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 SMNDC1O75940 238 aaKnown RBP eCLIP14.1□□□□□ -0.15
VRK3-217ENST00000599538 NCK1P16333 377 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 CD22P20273 847 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 CYP2A7P20853 494 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 ITGB7P26010 798 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 IL12RB1P42701 662 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 BDKRB1P46663 353 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 GNPDA1P46926 289 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 PRLHRP49683 370 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 IRX1P78414 480 aaPredicted RBP14.1□□□□□ -0.15
VRK3-217ENST00000599538 IMPG1Q17R60 797 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 LDLRAP1Q5SW96 308 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 HMBOX1Q6NT76 420 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 AMIGO2Q86SJ2 522 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 CACUL1Q86Y37 369 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 SLC22A15Q8IZD6 547 aa14.1□□□□□ -0.15
VRK3-217ENST00000599538 OR8D1Q8WZ84 308 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms