RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 UNC5AQ6ZN44 842 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 LDB1Q86U70 411 aaPredicted RBP19.81■□□□□ 0.76
SHMT1-209ENST00000582653 TRIM73Q86UV7 250 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 CLEC18CQ8NCF0 446 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 UBE2Q2Q8WVN8 375 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.81■□□□□ 0.76
SHMT1-209ENST00000582653 CLIP3Q96DZ5 547 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 CHRAC1Q9NRG0 131 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 RIMKLBQ9ULI2 386 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 PLAGL1Q9UM63 463 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 PLAAQ9Y263 795 aa19.81■□□□□ 0.76
SHMT1-209ENST00000582653 PCDHGA9Q9Y5G4 932 aaKnown RBP19.81■□□□□ 0.76
SHMT1-209ENST00000582653 IQCF5A8MTL0 148 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 PDGFAP04085 211 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 MLLT10P55197 1068 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 PRAMEP78395 509 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 CRADDP78560 199 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 IL10RAQ13651 578 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 SYTL3Q4VX76 610 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 FAM69BQ5VUD6 431 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 CDHR3Q6ZTQ4 885 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 ADAMTS17Q8TE56 1095 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 TTC1Q99614 292 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 ING2Q9H160 280 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 ACTR5Q9H9F9 607 aaPredicted RBP19.8■□□□□ 0.76
SHMT1-209ENST00000582653 PCMTD2Q9NV79 361 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 SPHK1Q9NYA1 384 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 HECTD1Q9ULT8 2610 aa19.8■□□□□ 0.76
SHMT1-209ENST00000582653 CAPN1P07384 714 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 UGT2B7P16662 529 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 CCR7P32248 378 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 KCNJ1P48048 391 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 CCL11P51671 97 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 SESN2P58004 480 aaPredicted RBP19.79■□□□□ 0.76
SHMT1-209ENST00000582653 FASTKD1Q53R41 847 aaKnown RBP19.79■□□□□ 0.76
SHMT1-209ENST00000582653 PAPD7Q5XG87 772 aaKnown RBP19.79■□□□□ 0.76
SHMT1-209ENST00000582653 SPESP1Q6UW49 350 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 VRK3Q8IV63 474 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 TBC1D21Q8IYX1 336 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 ENDOVQ8N8Q3 282 aaKnown RBP19.79■□□□□ 0.76
SHMT1-209ENST00000582653 PPHLN1Q8NEY8 458 aaKnown RBP19.79■□□□□ 0.76
SHMT1-209ENST00000582653 LKAAEAR1Q8TD35 194 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 OR2A14Q96R47 310 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 DPH2Q9BQC3 489 aaPredicted RBP19.79■□□□□ 0.76
SHMT1-209ENST00000582653 SLC25A23Q9BV35 468 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 FAM60AQ9NP50 221 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 ACSS2Q9NR19 701 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 MARCH4Q9P2E8 410 aaPredicted RBP19.79■□□□□ 0.76
SHMT1-209ENST00000582653 ANKMY1Q9P2S6 941 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 TCFL5Q9UL49 500 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 SNX7Q9UNH6 387 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 DRG1Q9Y295 367 aaKnown RBP19.79■□□□□ 0.76
SHMT1-209ENST00000582653 PIKFYVEQ9Y2I7 2098 aa19.79■□□□□ 0.76
SHMT1-209ENST00000582653 ARGFXA6NJG6 315 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 FGGP02679 453 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 CHRM5P08912 532 aaPredicted RBP19.78■□□□□ 0.76
SHMT1-209ENST00000582653 CCDC175P0C221 793 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 CYP2A7P20853 494 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 CXCR5P32302 372 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 SHMT2P34897 504 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 PLOD1Q02809 727 aaPredicted RBP19.78■□□□□ 0.76
SHMT1-209ENST00000582653 HSPA14Q0VDF9 509 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 PCID2Q5JVF3 399 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 NLRP9Q7RTR0 991 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 GSTA5Q7RTV2 222 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 ATCAYQ86WG3 371 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 LMNTD1Q8N9Z9 388 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 OR5K2Q8NHB8 316 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 POLG2Q9UHN1 485 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 FLNCQ14315 2725 aa19.78■□□□□ 0.76
SHMT1-209ENST00000582653 E7EQ34 232 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 HCRTR1O43613 425 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 HBQ1P09105 142 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 ITGA1P56199 1179 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 BASP1P80723 227 aaKnown RBP19.77■□□□□ 0.76
SHMT1-209ENST00000582653 CHAF1BQ13112 559 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 ZIC1Q15915 447 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 PTCHD3Q3KNS1 767 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 CPZQ66K79 652 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 DRICH1Q6PGQ1 229 aaPredicted RBP19.77■□□□□ 0.76
SHMT1-209ENST00000582653 ZNF662Q6ZS27 426 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 HOOK3Q86VS8 718 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 LRRC8AQ8IWT6 810 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 SYTL1Q8IYJ3 562 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 KRT222Q8N1A0 295 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 FLVCR1-AS1Q8TAF5 88 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 SGSM3Q96HU1 749 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 AP1M1Q9BXS5 423 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 SLC7A5P2Q9GIP4 190 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 CHRNA10Q9GZZ6 450 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 CATSPERZQ9NTU4 200 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 CIDEBQ9UHD4 219 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 ANAPC5Q9UJX4 755 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 CDYLQ9Y232 598 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 PCDHGB7Q9Y5F8 929 aa19.77■□□□□ 0.76
SHMT1-209ENST00000582653 ZNF749O43361 778 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 CEP104O60308 925 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 CEACAM4O75871 244 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 TMEM63AO94886 807 aa19.76■□□□□ 0.75
SHMT1-209ENST00000582653 AGXTP21549 392 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms