RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 HSD17B4P51659 736 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 STAT2P52630 851 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 ATP12AP54707 1039 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 RPS18P62269 152 aaKnown RBP4.79□□□□□ -1.64
NUP88-213ENST00000576862 CDK3Q00526 305 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 KIAA1644Q3SXP7 199 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 GLIPR1L2Q4G1C9 344 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 CFAP161Q6P656 301 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 CORO6Q6QEF8 472 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 CEP57L1Q8IYX8 460 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 GUF1Q8N442 669 aaKnown RBP4.79□□□□□ -1.64
NUP88-213ENST00000576862 ZBTB8BQ8NAP8 495 aaPredicted RBP4.79□□□□□ -1.64
NUP88-213ENST00000576862 PAPD5Q8NDF8 572 aaKnown RBP4.79□□□□□ -1.64
NUP88-213ENST00000576862 ZNF622Q969S3 477 aaKnown RBP eCLIP4.79□□□□□ -1.646e-7■□□□□ 8.1
NUP88-213ENST00000576862 MYADMQ96S97 322 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 ARRDC1-AS1Q9H2J1 176 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 MMP27Q9H306 513 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 SLC7A7Q9UM01 511 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 MBD5Q9P267 1494 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 ADCY10Q96PN6 1610 aa4.79□□□□□ -1.64
NUP88-213ENST00000576862 DENND4BO75064 1496 aaPredicted RBP4.78□□□□□ -1.64
NUP88-213ENST00000576862 A0A0G2JLW4 131 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 FEZF1A0PJY2 475 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 A8MV72 311 aaPredicted RBP4.78□□□□□ -1.64
NUP88-213ENST00000576862 OR10H2O60403 315 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 SAT1P21673 171 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 CDH11P55287 796 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 PPIGQ13427 754 aaKnown RBP eCLIP4.78□□□□□ -1.64
NUP88-213ENST00000576862 CCDC6Q16204 474 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 C15orf59Q2T9L4 293 aaPredicted RBP4.78□□□□□ -1.64
NUP88-213ENST00000576862 CEP85LQ5SZL2 805 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 FAM114A1Q8IWE2 563 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 MINDY1Q8N5J2 469 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 MOSPD2Q8NHP6 518 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 GRHL3Q8TE85 626 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 RNF128Q8TEB7 428 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 PRPF31Q8WWY3 499 aaKnown RBP4.78□□□□□ -1.64
NUP88-213ENST00000576862 HSD17B8Q92506 261 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 JAKMIP2Q96AA8 810 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 OLFM1Q99784 485 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 RTP3Q9BQQ7 232 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 SNX8Q9Y5X2 465 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 NCOA1Q15788 1441 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 C9orf84Q5VXU9 1444 aa4.78□□□□□ -1.64
NUP88-213ENST00000576862 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.77□□□□□ -1.65
NUP88-213ENST00000576862 ADGRL2O95490 1459 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 SHANK2Q9UPX8 1470 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 WDR7Q9Y4E6 1490 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 LOC100509620A0A075B734 347 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 A0A1W2PRB8 838 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 MED24O75448 989 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 TOMM70O94826 608 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 NADKO95544 446 aaPredicted RBP4.77□□□□□ -1.65
NUP88-213ENST00000576862 LGALS3BPQ08380 585 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 BAATQ14032 418 aaPredicted RBP4.77□□□□□ -1.65
NUP88-213ENST00000576862 KCTD2Q14681 263 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 NR1D2Q14995 579 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 MDH1BQ5I0G3 518 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 BRINP3Q76B58 766 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 ISCA2Q86U28 154 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 CTCFLQ8NI51 663 aaPredicted RBP4.77□□□□□ -1.65
NUP88-213ENST00000576862 LPGAT1Q92604 370 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 TMCO6Q96DC7 493 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 BTBD10Q9BSF8 475 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 TRAF4Q9BUZ4 470 aaPredicted RBP4.77□□□□□ -1.65
NUP88-213ENST00000576862 TUBE1Q9UJT0 475 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 OSGIN1Q9UJX0 560 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 KCNJ14Q9UNX9 436 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 RABGAP1Q9Y3P9 1069 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 PLCH2O75038 1416 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 TTC37Q6PGP7 1564 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 ANKRD30AQ9BXX3 1397 aa4.77□□□□□ -1.65
NUP88-213ENST00000576862 KIF26BQ2KJY2 2108 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 KDM6BO15054 1643 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 DNMT1P26358 1616 aaKnown RBP4.76□□□□□ -1.65
NUP88-213ENST00000576862 IGLV9-49A0A0B4J1Y8 123 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 ANKUB1A6NFN9 424 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 GLOD5A6NK44 160 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 HHLA1C9JL84 531 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 DNM1LO00429 736 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 CLIC2O15247 247 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 NGFP01138 241 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 TPOP07202 933 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 LDHCP07864 332 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 ITGA3P26006 1051 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 ALDH4A1P30038 563 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 MAP2K2P36507 400 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 B3GALT5-AS1P59052 145 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 KRTAP10-7P60409 375 aaPredicted RBP4.76□□□□□ -1.65
NUP88-213ENST00000576862 DCAF10Q5QP82 559 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 TMEM211Q6ICI0 200 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 ZNF554Q86TJ5 538 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 DNAJC22Q8N4W6 341 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 AFAP1Q8N556 730 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 TRIML1Q8N9V2 468 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 WDSUB1Q8N9V3 476 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 ZNF383Q8NA42 475 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 OR5M8Q8NGP6 311 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 OR1J1Q8NGS3 322 aa4.76□□□□□ -1.65
NUP88-213ENST00000576862 FGFBP3Q8TAT2 258 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms