RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 R4GN57 208 aa23.42■■□□□ 1.34
ATPAF1-213ENST00000574428 FAM107AO95990 144 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 ANXA5P08758 320 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 EEF1DP29692 281 aaKnown RBP23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 HALP42357 657 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 CTSKP43235 329 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 AP1S2P56377 157 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 HERVK_113P63132 956 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 CDKL1Q00532 357 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 PEAR1Q5VY43 1037 aaPredicted RBP23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 OR6Y1Q8NGX8 325 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 RAB3IL1Q8TBN0 382 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 PKP4Q99569 1192 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 ERVK-6Q9BXR3 956 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 ZNF395Q9H8N7 513 aaPredicted RBP23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 FANCMQ8IYD8 2048 aa23.41■■□□□ 1.34
ATPAF1-213ENST00000574428 A6NCN8 305 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 TAPBPO15533 448 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 IMPDH1P20839 514 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 ASPHQ12797 758 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 PRKG2Q13237 762 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 STX3Q13277 289 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 RPE65Q16518 533 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 ZNF678Q5SXM1 525 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 ABRAXAS1Q6UWZ7 409 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 WASH2PQ6VEQ5 465 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 RGS9BPQ6ZS82 235 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 DCUN1D3Q8IWE4 304 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 FBXO15Q8NCQ5 510 aaPredicted RBP23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 OR5K2Q8NHB8 316 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 LMX1AQ8TE12 382 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 ZNF473Q8WTR7 871 aaKnown RBP23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 L3HYPDHQ96EM0 354 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 HGH1Q9BTY7 390 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 FAM107BQ9H098 131 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 TRIT1Q9H3H1 467 aaKnown RBP23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 SLCO1B3Q9NPD5 702 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 WASH6PQ9NQA3 447 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 FSCN3Q9NQT6 498 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 WWOXQ9NZC7 414 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 PTBP2Q9UKA9 531 aaKnown RBP23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 PCOLCE2Q9UKZ9 415 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 TDRKHQ9Y2W6 561 aaKnown RBP23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 STX16-NPEPL1H3BU86 382 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 STX16O14662 325 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 SDC3O75056 442 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 CFIP05156 583 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 ARRB2P32121 409 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 CCR10P46092 362 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 CFAP157Q5JU67 520 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 ATG16L1Q676U5 607 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 SULT1C3Q6IMI6 304 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 FAM47EQ6ZV65 393 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 CHMP6Q96FZ7 201 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 ZNF317Q96PQ6 595 aaPredicted RBP23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 FERD3LQ96RJ6 166 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 TMEM79Q9BSE2 394 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 PLAGL1Q9UM63 463 aa23.4■■□□□ 1.34
ATPAF1-213ENST00000574428 KNL1Q8NG31 2342 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 TDRD6O60522 2096 aaKnown RBP23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 TRBV23OR9-2A0A075B6M9 112 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 MYO1CO00159 1063 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 KLF11O14901 512 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 ITM2AO43736 263 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 H2AFYO75367 372 aaKnown RBP23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 LYPLA1O75608 230 aaPredicted RBP23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 RPN2P04844 631 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 VIMP08670 466 aaKnown RBP23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 MTHFD1P11586 935 aaKnown RBP23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 F3P13726 295 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 HSPA7P48741 367 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 HNRNPKP61978 463 aaKnown RBP eCLIP23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 ELOCQ15369 112 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 UNC50Q53HI1 259 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 ZNF548Q8NEK5 533 aaPredicted RBP23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 CCDC138Q96M89 665 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 C20orf27Q9GZN8 174 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 SPASTQ9UBP0 616 aa23.39■■□□□ 1.33
ATPAF1-213ENST00000574428 PRAMEF33A0A0G2JMD5 474 aa23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 SUPT7LO94864 414 aa23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 SLC16A8O95907 504 aa23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 GRK2P25098 689 aa23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 NUBP1P53384 320 aa23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 ZXDCQ2QGD7 858 aaPredicted RBP23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 CDKL4Q5MAI5 379 aa23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 TTC23LQ6PF05 361 aa23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 ATG14Q6ZNE5 492 aa23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 SFTPA2Q8IWL1 248 aa23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 TBC1D21Q8IYX1 336 aa23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 NSUN5Q96P11 429 aaKnown RBP23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 ERVMER34-1Q9H9K5 563 aa23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 STOX2Q9P2F5 926 aaPredicted RBP23.38■■□□□ 1.33
ATPAF1-213ENST00000574428 HOXD12P35452 270 aa23.37■■□□□ 1.33
ATPAF1-213ENST00000574428 GDF5P43026 501 aa23.37■■□□□ 1.33
ATPAF1-213ENST00000574428 SLC1A6P48664 564 aa23.37■■□□□ 1.33
ATPAF1-213ENST00000574428 GRB7Q14451 532 aa23.37■■□□□ 1.33
ATPAF1-213ENST00000574428 KRT33BQ14525 404 aa23.37■■□□□ 1.33
ATPAF1-213ENST00000574428 FAM46DQ8NEK8 389 aa23.37■■□□□ 1.33
ATPAF1-213ENST00000574428 OR9A1PQ8NGU1 263 aa23.37■■□□□ 1.33
ATPAF1-213ENST00000574428 MAGEC3Q8TD91 643 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms