RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CUZD1Q86UP6 607 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 RGL4Q8IZJ4 473 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 CACNA2D3Q8IZS8 1091 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 CCDC197Q8NCU1 140 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 PHC3Q8NDX5 983 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 OR9A1PQ8NGU1 263 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 C1orf216Q8TAB5 229 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 TRPC4APQ8TEL6 797 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 GAB3Q8WWW8 586 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 ESAMQ96AP7 390 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 THOC1Q96FV9 657 aaKnown RBP13.33□□□□□ -0.28
CCDC40-209ENST00000573474 NSUN5Q96P11 429 aaKnown RBP13.33□□□□□ -0.28
CCDC40-209ENST00000573474 INSM2Q96T92 566 aaPredicted RBP13.33□□□□□ -0.28
CCDC40-209ENST00000573474 TMEM79Q9BSE2 394 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 HGH1Q9BTY7 390 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 TMEM168Q9H0V1 697 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 TRIT1Q9H3H1 467 aaKnown RBP13.33□□□□□ -0.28
CCDC40-209ENST00000573474 WASH6PQ9NQA3 447 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 OPTCQ9UBM4 332 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 MARCOQ9UEW3 520 aaPredicted RBP13.33□□□□□ -0.28
CCDC40-209ENST00000573474 ZDHHC2Q9UIJ5 367 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 FBXO4Q9UKT5 387 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 STK38LQ9Y2H1 464 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 WDR37Q9Y2I8 494 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 ASB1Q9Y576 335 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 ST14Q9Y5Y6 855 aa13.33□□□□□ -0.28
CCDC40-209ENST00000573474 PDZK1P1A8MUH7 402 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 SLCO1B7G3V0H7 640 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 UBFD1O14562 309 aaKnown RBP13.32□□□□□ -0.28
CCDC40-209ENST00000573474 CCNT2O60583 730 aaKnown RBP13.32□□□□□ -0.28
CCDC40-209ENST00000573474 TSPAN8P19075 237 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 HALP42357 657 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 SLC6A12P48065 614 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 ILF3Q12906 894 aaKnown RBP eCLIP13.32□□□□□ -0.28
CCDC40-209ENST00000573474 GTF2H2Q13888 395 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 RBBP7Q16576 425 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 CCSMST1Q4G0I0 132 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 GTF2H2CQ6P1K8 395 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 ABRAXAS1Q6UWZ7 409 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 LRRC70Q7Z2Q7 622 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 GOLGA7Q7Z5G4 137 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 BMP8AQ7Z5Y6 402 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 PARGQ86W56 976 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 DCUN1D3Q8IWE4 304 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 KLHDC8AQ8IYD2 350 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 TBC1D21Q8IYX1 336 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 AFAP1L2Q8N4X5 818 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 FBXL6Q8N531 539 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 TEX9Q8N6V9 391 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 ANKS4BQ8N8V4 417 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 OR5AR1Q8NGP9 310 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 OR5K2Q8NHB8 316 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 RFWD2Q8NHY2 731 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 GPBAR1Q8TDU6 330 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 RAD51AP1Q96B01 352 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 SKA1Q96BD8 255 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 FAR2Q96K12 515 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 C12orf66Q96MD2 445 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 PLCD4Q9BRC7 762 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 SHCBP1LQ9BZQ2 653 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 SLC32A1Q9H598 525 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 MID1IP1Q9NPA3 183 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 SEMA4BQ9NPR2 832 aaPredicted RBP13.32□□□□□ -0.28
CCDC40-209ENST00000573474 PRDM8Q9NQV8 689 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 KCNK4Q9NYG8 393 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 STOX2Q9P2F5 926 aaPredicted RBP13.32□□□□□ -0.28
CCDC40-209ENST00000573474 VTI1BQ9UEU0 232 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 DCTN4Q9UJW0 460 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 PCOLCE2Q9UKZ9 415 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 ARL2BPQ9Y2Y0 163 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 TRAF6Q9Y4K3 522 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 ANGPTL3Q9Y5C1 460 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 HEBP2Q9Y5Z4 205 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 USH1CQ9Y6N9 552 aa13.32□□□□□ -0.28
CCDC40-209ENST00000573474 MATN2O00339 956 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 BCAT2O15382 392 aaPredicted RBP13.31□□□□□ -0.28
CCDC40-209ENST00000573474 FGF4P08620 206 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 ALOX15P16050 662 aaPredicted RBP13.31□□□□□ -0.28
CCDC40-209ENST00000573474 EPB42P16452 691 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 AK4P27144 223 aaPredicted RBP13.31□□□□□ -0.28
CCDC40-209ENST00000573474 HSD17B2P37059 387 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 ACTR1BP42025 376 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 GDF5P43026 501 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 ARFIP2P53365 341 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 AQP5P55064 265 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 PKNOX1P55347 436 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 ACTR1AP61163 376 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 SH3BP2P78314 561 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 CLCA4Q14CN2 919 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 RPE65Q16518 533 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 PTCHD3Q3KNS1 767 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 SH2D4BQ5SQS7 431 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 AGTRAPQ6RW13 159 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 ARMCX6Q7L4S7 300 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 NRROSQ86YC3 692 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 PHACTR4Q8IZ21 702 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 AGR3Q8TD06 166 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 AGAP11Q8TF27 550 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 C10orf82Q8WW14 230 aa13.31□□□□□ -0.28
CCDC40-209ENST00000573474 FERD3LQ96RJ6 166 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms