RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 BANF1O75531 89 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 SPAG6O75602 509 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 USP1O94782 785 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 ZBTB11O95625 1053 aaPredicted RBP14.57□□□□□ -0.08
VPS39-210ENST00000568357 DLGAP3O95886 979 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 OGNP20774 298 aaKnown RBP14.57□□□□□ -0.08
VPS39-210ENST00000568357 PAFAH1B1P43034 410 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 ATP1A2P50993 1020 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 ADARP55265 1226 aaKnown RBP14.57□□□□□ -0.08
VPS39-210ENST00000568357 DR1Q01658 176 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 CTBP1Q13363 440 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 DNAJC21Q5F1R6 531 aaKnown RBP14.57□□□□□ -0.08
VPS39-210ENST00000568357 KIAA1614Q5VZ46 1190 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 IZUMO3Q5VZ72 239 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 IGDCC3Q8IVU1 814 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 DENND6AQ8IWF6 608 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 UNC5BQ8IZJ1 945 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 NLGN4XQ8N0W4 816 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 IL22RA1Q8N6P7 574 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 NLGN4YQ8NFZ3 816 aaPredicted RBP14.57□□□□□ -0.08
VPS39-210ENST00000568357 CFAP61Q8NHU2 1237 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 FAM136AQ96C01 138 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 STAMBPL1Q96FJ0 436 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 PWWP2AQ96N64 755 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 PANX3Q96QZ0 392 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 RNF14Q9UBS8 474 aa14.57□□□□□ -0.08
VPS39-210ENST00000568357 MATN2O00339 956 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 TTI1O43156 1089 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 TIAF1O95411 115 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 ESR1P03372 595 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 LIFP15018 202 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 CDH3P22223 829 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 MAP4P27816 1152 aaKnown RBP14.56□□□□□ -0.08
VPS39-210ENST00000568357 ARL4DP49703 201 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 RHDQ02161 417 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 DHX9Q08211 1270 aaKnown RBP14.56□□□□□ -0.08
VPS39-210ENST00000568357 TUBB3Q13509 450 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 THOC5Q13769 683 aaKnown RBP14.56□□□□□ -0.08
VPS39-210ENST00000568357 GRB7Q14451 532 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.56□□□□□ -0.08
VPS39-210ENST00000568357 RNF187Q5TA31 235 aaPredicted RBP14.56□□□□□ -0.08
VPS39-210ENST00000568357 ZNF470Q6ECI4 717 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 PWWP2BQ6NUJ5 590 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 SYDE1Q6ZW31 735 aaPredicted RBP14.56□□□□□ -0.08
VPS39-210ENST00000568357 OTOAQ7RTW8 1153 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 PCGF5Q86SE9 256 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 HOOK3Q86VS8 718 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 RASGRP3Q8IV61 690 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 SPNS2Q8IVW8 549 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 CARFQ8N187 725 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 LMNTD1Q8N9Z9 388 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 FLVCR1-AS1Q8TAF5 88 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 WBP1Q96G27 269 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 TRIM51Q9BSJ1 452 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 MENTQ9BUN1 341 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 PITPNM3Q9BZ71 974 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 ULBP3Q9BZM4 244 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 TWSG1Q9GZX9 223 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 KLHL25Q9H0H3 589 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 PDE7BQ9NP56 450 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 C1GALT1Q9NS00 363 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 FGF21Q9NSA1 209 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 C20orf96Q9NUD7 363 aaPredicted RBP14.56□□□□□ -0.08
VPS39-210ENST00000568357 SPHK1Q9NYA1 384 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 ACTR10Q9NZ32 417 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 CIDEBQ9UHD4 219 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 BTRCQ9Y297 605 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 PCDHGA4Q9Y5G9 962 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 FAM169AQ9Y6X4 670 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 SDK2Q58EX2 2172 aa14.56□□□□□ -0.08
VPS39-210ENST00000568357 LOC101059948A0A1B0GTJ6 334 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 C2orf74A8MZ97 194 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 CCDC188H7C350 402 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 KPNA5O15131 536 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 PFDN6O15212 129 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 TP73O15350 636 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 KIAA0754O94854 1291 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 CHRM5P08912 532 aaPredicted RBP14.55□□□□□ -0.08
VPS39-210ENST00000568357 PKMP14618 531 aaKnown RBP14.55□□□□□ -0.08
VPS39-210ENST00000568357 PVRP15151 417 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 ST6GAL1P15907 406 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 CHRM3P20309 590 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 SHMT2P34897 504 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 ETF1P62495 437 aaKnown RBP14.55□□□□□ -0.08
VPS39-210ENST00000568357 TUBB4BP68371 445 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 CYP4F2P78329 520 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 MRPS25P82663 173 aaKnown RBP14.55□□□□□ -0.08
VPS39-210ENST00000568357 ACY1Q03154 408 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 TUBB2AQ13885 445 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 TMED2Q15363 201 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 GPR19Q15760 415 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 KYNUQ16719 465 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 LONRF1Q17RB8 773 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 HSP90AA5PQ58FG0 334 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 UNC5DQ6UXZ4 953 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 PPP1R3BQ86XI6 285 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 GALNT6Q8NCL4 622 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 TTC9Q92623 222 aa14.55□□□□□ -0.08
VPS39-210ENST00000568357 ZNF501Q96CX3 271 aaPredicted RBP14.55□□□□□ -0.08
VPS39-210ENST00000568357 RUNDC3BQ96NL0 473 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms