RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 LURAP1LQ8IV03 231 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 LRRN4CLQ8ND94 238 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 AARSD1Q9BTE6 412 aaKnown RBP16.8■□□□□ 0.28
CLN3-217ENST00000565354 EPB41L1Q9H4G0 881 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 UCK1Q9HA47 277 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 PLAC1Q9HBJ0 212 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 SLC40A1Q9NP59 571 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 MOCS1Q9NZB8 636 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 SLC17A6Q9P2U8 582 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 ASF1AQ9Y294 204 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 UNC13CQ8NB66 2214 aa16.8■□□□□ 0.28
CLN3-217ENST00000565354 TEX15Q9BXT5 2789 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 PRAMEF33A0A0G2JMD5 474 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 A0A1W2PQM1 296 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 D6RAR5 112 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 NTN3O00634 580 aaPredicted RBP16.79■□□□□ 0.28
CLN3-217ENST00000565354 CASC3O15234 703 aaKnown RBP16.79■□□□□ 0.28
CLN3-217ENST00000565354 CPNE6O95741 557 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 ITGB2P05107 769 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 STX2P32856 288 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 PHBP35232 272 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 NFKB2Q00653 900 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 UGT3A1Q6NUS8 523 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 STRA8Q7Z7C7 330 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 GALNT7Q86SF2 657 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 SLC26A11Q86WA9 606 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 CTAGE3PQ8IX95 158 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 SLC22A15Q8IZD6 547 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 ZBTB2Q8N680 514 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 GPATCH11Q8N954 259 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 CFAP61Q8NHU2 1237 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 NCSTNQ92542 709 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 KCNJ9Q92806 393 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 EXTL1Q92935 676 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 LIN37Q96GY3 246 aaPredicted RBP16.79■□□□□ 0.28
CLN3-217ENST00000565354 FOPNLQ96NB1 174 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 NDNQ99608 321 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 DPYSL5Q9BPU6 564 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 ARHGAP9Q9BRR9 750 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 TRIT1Q9H3H1 467 aaKnown RBP16.79■□□□□ 0.28
CLN3-217ENST00000565354 MVB12BQ9H7P6 319 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 RDH14Q9HBH5 336 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 WDR70Q9NW82 654 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 TSR3Q9UJK0 312 aaKnown RBP16.79■□□□□ 0.28
CLN3-217ENST00000565354 NFU1Q9UMS0 254 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 PCDHGA7Q9Y5G6 932 aa16.79■□□□□ 0.28
CLN3-217ENST00000565354 NBASA2RRP1 2371 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 TCRBV9S1A1TA0A576 114 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 TMX2-CTNND1H3BSU7 103 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 PLD2O14939 933 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 SUV39H1O43463 412 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 KDM1AO60341 852 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 GPC4O75487 556 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 UBXN7O94888 489 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 SLU7O95391 586 aaKnown RBP16.78■□□□□ 0.28
CLN3-217ENST00000565354 AHSGP02765 367 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 RPN2P04844 631 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 TYRP1P17643 537 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 CD1CP29017 333 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 SLC5A2P31639 672 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 INHBCP55103 352 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 ABRQ12979 859 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 CLPPQ16740 277 aaPredicted RBP16.78■□□□□ 0.28
CLN3-217ENST00000565354 PHF19Q5T6S3 580 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 ZNF549Q6P9A3 640 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 KLHL35Q6PF15 583 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 PHC3Q8NDX5 983 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 ZFPM2Q8WW38 1151 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 JPH3Q8WXH2 748 aaPredicted RBP16.78■□□□□ 0.28
CLN3-217ENST00000565354 TMEM74Q96NL1 305 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 HGH1Q9BTY7 390 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 STRADBQ9C0K7 418 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 LRRC4CQ9HCJ2 640 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 TAS2R13Q9NYV9 303 aa16.78■□□□□ 0.28
CLN3-217ENST00000565354 TRMT6Q9UJA5 497 aaKnown RBP16.78■□□□□ 0.28
CLN3-217ENST00000565354 CORO1CQ9ULV4 474 aaPredicted RBP16.78■□□□□ 0.28
CLN3-217ENST00000565354 TDRKHQ9Y2W6 561 aaKnown RBP16.78■□□□□ 0.28
CLN3-217ENST00000565354 GPX6P59796 221 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 TUBB4BP68371 445 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 PRKG2Q13237 762 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 SLMAPQ14BN4 828 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 FAM45BPQ6NSW5 357 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 ARMC6Q6NXE6 501 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 TTC23LQ6PF05 361 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 ZNF574Q6ZN55 896 aaPredicted RBP16.77■□□□□ 0.28
CLN3-217ENST00000565354 VRK3Q8IV63 474 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 TBC1D21Q8IYX1 336 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 SIDT2Q8NBJ9 832 aaKnown RBP16.77■□□□□ 0.28
CLN3-217ENST00000565354 ACVR1CQ8NER5 493 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 FAM45AQ8TCE6 357 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 FBF1Q8TES7 1133 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 ELMO2Q96JJ3 720 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 GPR21Q99679 349 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 NUDT22Q9BRQ3 303 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 KIR3DX1Q9H7L2 352 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 AKAP7Q9P0M2 348 aaPredicted RBP16.77■□□□□ 0.28
CLN3-217ENST00000565354 ACSL6Q9UKU0 697 aa16.77■□□□□ 0.28
CLN3-217ENST00000565354 SLCO2B1O94956 709 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 SFTPCP11686 197 aa16.76■□□□□ 0.27
CLN3-217ENST00000565354 SAT1P21673 171 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms