RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CATSPERZQ9NTU4 200 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 OR6C2Q9NZP2 312 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 POLG2Q9UHN1 485 aa14.39□□□□□ -0.11
CLN3-213ENST00000565047 TTC7AQ9ULT0 858 aaPredicted RBP14.39□□□□□ -0.11
CLN3-213ENST00000565047 PIPSLA2A3N6 862 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 PRMT5O14744 637 aaPredicted RBP14.38□□□□□ -0.11
CLN3-213ENST00000565047 CD3EAPO15446 510 aaKnown RBP14.38□□□□□ -0.11
CLN3-213ENST00000565047 CHRM5P08912 532 aaPredicted RBP14.38□□□□□ -0.11
CLN3-213ENST00000565047 UGT2B7P16662 529 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 MGAT1P26572 445 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 SHMT2P34897 504 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 PRAMEP78395 509 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 BASP1P80723 227 aaKnown RBP14.38□□□□□ -0.11
CLN3-213ENST00000565047 ERV3-1Q14264 604 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 CYP1B1Q16678 543 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 DNAJC21Q5F1R6 531 aaKnown RBP14.38□□□□□ -0.11
CLN3-213ENST00000565047 CAND1Q86VP6 1230 aaKnown RBP14.38□□□□□ -0.11
CLN3-213ENST00000565047 REXO1L1PQ8IX06 675 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 DSELQ8IZU8 1212 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 KRT222Q8N1A0 295 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 LINC01555Q8NAE3 123 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 ABHD17AQ96GS6 310 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 MS4A14Q96JA4 679 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 BIRC8Q96P09 236 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 TTC1Q99614 292 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 KLHL25Q9H0H3 589 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 ACTL8Q9H568 366 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 PCMTD2Q9NV79 361 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 SOHLH2Q9NX45 425 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 SYBUQ9NX95 663 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 BFARQ9NZS9 450 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 JRKLQ9Y4A0 524 aa14.38□□□□□ -0.11
CLN3-213ENST00000565047 PYCARD-AS1I3L0S3 204 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 AP3B1O00203 1094 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 MEN1O00255 615 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 SLC28A2O43868 658 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 AVILO75366 819 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 KATNA1O75449 491 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 ZIC2O95409 532 aaPredicted RBP14.37□□□□□ -0.11
CLN3-213ENST00000565047 CTSBP07858 339 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 RPS3P23396 243 aaKnown RBP eCLIP14.37□□□□□ -0.114e-6■■□□□ 12.9
CLN3-213ENST00000565047 PKLRP30613 574 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 RPS18P62269 152 aaKnown RBP14.37□□□□□ -0.11
CLN3-213ENST00000565047 TRIP13Q15645 432 aaPredicted RBP14.37□□□□□ -0.11
CLN3-213ENST00000565047 KYNUQ16719 465 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 AARS2Q5JTZ9 985 aaKnown RBP14.37□□□□□ -0.11
CLN3-213ENST00000565047 ANKRD22Q5VYY1 191 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 CES3Q6UWW8 571 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 GSTA5Q7RTV2 222 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 TRIM73Q86UV7 250 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 TMEM126BQ8IUX1 230 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 MPP5Q8N3R9 675 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 FAM117AQ9C073 453 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 CHST8Q9H2A9 424 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 PLAGL1Q9UM63 463 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 SOX13Q9UN79 622 aa14.37□□□□□ -0.11
CLN3-213ENST00000565047 FARSAQ9Y285 508 aaKnown RBP14.37□□□□□ -0.11
CLN3-213ENST00000565047 SPTBP11277 2137 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 TMEM150CB9EJG8 249 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 K7EM74 188 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 PRICKLE3O43900 615 aaPredicted RBP14.36□□□□□ -0.11
CLN3-213ENST00000565047 TMEM63AO94886 807 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 RAB40ALP0C0E4 278 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 PPARGP37231 505 aaPredicted RBP14.36□□□□□ -0.11
CLN3-213ENST00000565047 GCGRP47871 477 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 TTPAP49638 278 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 HSPA14Q0VDF9 509 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 IL10RAQ13651 578 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 GBX1Q14549 363 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 UGT8Q16880 541 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 SLC5A12Q1EHB4 618 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 TYSND1Q2T9J0 566 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 SYTL3Q4VX76 610 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 CTSL3PQ5NE16 218 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 ARMC3Q5W041 872 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 APLFQ8IW19 511 aaPredicted RBP14.36□□□□□ -0.11
CLN3-213ENST00000565047 AGGF1Q8N302 714 aaeCLIP14.36□□□□□ -0.11
CLN3-213ENST00000565047 DNAJC22Q8N4W6 341 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 C19orf47Q8N9M1 422 aaKnown RBP14.36□□□□□ -0.11
CLN3-213ENST00000565047 ADAMTS17Q8TE56 1095 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 ASZ1Q8WWH4 475 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 CPT1BQ92523 772 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 LPGAT1Q92604 370 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 TCTN2Q96GX1 697 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 PBKQ96KB5 322 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 TRIM56Q9BRZ2 755 aaKnown RBP14.36□□□□□ -0.11
CLN3-213ENST00000565047 POLHQ9Y253 713 aa14.36□□□□□ -0.11
CLN3-213ENST00000565047 TDRKHQ9Y2W6 561 aaKnown RBP14.36□□□□□ -0.11
CLN3-213ENST00000565047 SPTA1P02549 2419 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 VAPBO95292 243 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 MAGEA3P43357 314 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 RAB28P51157 221 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 PMS2P54278 862 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 CSE1LP55060 971 aaKnown RBP14.35□□□□□ -0.11
CLN3-213ENST00000565047 ADARP55265 1226 aaKnown RBP14.35□□□□□ -0.11
CLN3-213ENST00000565047 KIR2DS3Q14952 304 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 FAM198BQ6UWH4 519 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 UNC5DQ6UXZ4 953 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 PRICKLE2Q7Z3G6 844 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 SYVN1Q86TM6 617 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms