RNA–Protein interactions for RNA: ENST00000563952.1

CMTM4-204, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-204ENST00000563952 BTRCQ9Y297 605 aa29.79■■■□□ 2.36
CMTM4-204ENST00000563952 DNALI1O14645 258 aaPredicted RBP29.78■■■□□ 2.36
CMTM4-204ENST00000563952 KPNA5O15131 536 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 KDM1AO60341 852 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 SLCO2B1O94956 709 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 PVRP15151 417 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 ST6GAL1P15907 406 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 STAT5AP42229 794 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 TUBB4BP68371 445 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 TUBB2AQ13885 445 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 ZNF470Q6ECI4 717 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 TMEM135Q86UB9 458 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 HOOK3Q86VS8 718 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 CILP2Q8IUL8 1156 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 LSM14AQ8ND56 463 aaKnown RBP29.78■■■□□ 2.36
CMTM4-204ENST00000563952 SKA2Q8WVK7 121 aaPredicted RBP29.78■■■□□ 2.36
CMTM4-204ENST00000563952 FAM136AQ96C01 138 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 SIGLEC10Q96LC7 697 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 TUBB2BQ9BVA1 445 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 CIDEBQ9UHD4 219 aa29.78■■■□□ 2.36
CMTM4-204ENST00000563952 ZCWPW2A0A1B0GU75 182 aa29.77■■■□□ 2.36
CMTM4-204ENST00000563952 NIPSNAP2O75323 286 aa29.77■■■□□ 2.36
CMTM4-204ENST00000563952 PRB1P04280 392 aa29.77■■■□□ 2.36
CMTM4-204ENST00000563952 RPN2P04844 631 aa29.77■■■□□ 2.36
CMTM4-204ENST00000563952 CHRM5P08912 532 aaPredicted RBP29.77■■■□□ 2.36
CMTM4-204ENST00000563952 IZUMO3Q5VZ72 239 aa29.77■■■□□ 2.36
CMTM4-204ENST00000563952 SPESP1Q6UW49 350 aa29.77■■■□□ 2.36
CMTM4-204ENST00000563952 CENPUQ71F23 418 aa29.77■■■□□ 2.36
CMTM4-204ENST00000563952 BPHLQ86WA6 291 aaPredicted RBP29.77■■■□□ 2.36
CMTM4-204ENST00000563952 SLC12A9Q9BXP2 914 aa29.77■■■□□ 2.36
CMTM4-204ENST00000563952 PITPNM3Q9BZ71 974 aa29.77■■■□□ 2.36
CMTM4-204ENST00000563952 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP29.77■■■□□ 2.36
CMTM4-204ENST00000563952 MAP3K7O43318 606 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 USP1O94782 785 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 ESR1P03372 595 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 F7P08709 466 aaPredicted RBP29.76■■■□□ 2.35
CMTM4-204ENST00000563952 UGT2B7P16662 529 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 ZNF789Q5FWF6 425 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 UNC5DQ6UXZ4 953 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 PCGF5Q86SE9 256 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 TRIM73Q86UV7 250 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 EFHD1Q9BUP0 239 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 FANCEQ9HB96 536 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 C20orf96Q9NUD7 363 aaPredicted RBP29.76■■■□□ 2.35
CMTM4-204ENST00000563952 SPHK1Q9NYA1 384 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 OR6C2Q9NZP2 312 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 IL17BQ9UHF5 180 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 TSR3Q9UJK0 312 aaKnown RBP29.76■■■□□ 2.35
CMTM4-204ENST00000563952 VPS9D1Q9Y2B5 631 aa29.76■■■□□ 2.35
CMTM4-204ENST00000563952 H3BMM5 538 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 TK2O00142 265 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 NTRK1P04629 796 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 PAFAH1B1P43034 410 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 DR1Q01658 176 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 LONRF1Q17RB8 773 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 PLEKHS1Q5SXH7 462 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 TMEM126BQ8IUX1 230 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 DCUN1D3Q8IWE4 304 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 EXTL1Q92935 676 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 ZNF501Q96CX3 271 aaPredicted RBP29.75■■■□□ 2.35
CMTM4-204ENST00000563952 WBP1Q96G27 269 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 RUNDC3BQ96NL0 473 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 FCRL4Q96PJ5 515 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 TRAPPC9Q96Q05 1148 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 KCND1Q9NSA2 647 aa29.75■■■□□ 2.35
CMTM4-204ENST00000563952 INTS10Q9NVR2 710 aaKnown RBP29.75■■■□□ 2.35
CMTM4-204ENST00000563952 ZNF891A8MT65 544 aaPredicted RBP29.74■■■□□ 2.35
CMTM4-204ENST00000563952 FANCGO15287 622 aa29.74■■■□□ 2.35
CMTM4-204ENST00000563952 CCNYL3P0C7X3 344 aa29.74■■■□□ 2.35
CMTM4-204ENST00000563952 CHRM3P20309 590 aa29.74■■■□□ 2.35
CMTM4-204ENST00000563952 DLSTP36957 453 aa29.74■■■□□ 2.35
CMTM4-204ENST00000563952 ADARP55265 1226 aaKnown RBP29.74■■■□□ 2.35
CMTM4-204ENST00000563952 CTBP1Q13363 440 aa29.74■■■□□ 2.35
CMTM4-204ENST00000563952 LY6DQ14210 128 aa29.74■■■□□ 2.35
CMTM4-204ENST00000563952 DENND6AQ8IWF6 608 aa29.74■■■□□ 2.35
CMTM4-204ENST00000563952 C17orf53Q8N3J3 647 aaPredicted RBP29.74■■■□□ 2.35
CMTM4-204ENST00000563952 SLC45A3Q96JT2 553 aa29.74■■■□□ 2.35
CMTM4-204ENST00000563952 OR2A14Q96R47 310 aa29.74■■■□□ 2.35
CMTM4-204ENST00000563952 FBXO6Q9NRD1 293 aaPredicted RBP29.74■■■□□ 2.35
CMTM4-204ENST00000563952 CROTQ9UKG9 612 aa29.74■■■□□ 2.35
CMTM4-204ENST00000563952 RUVBL2Q9Y230 463 aaKnown RBP29.74■■■□□ 2.35
CMTM4-204ENST00000563952 ISM1B1AKI9 464 aa29.73■■■□□ 2.35
CMTM4-204ENST00000563952 BANF1O75531 89 aa29.73■■■□□ 2.35
CMTM4-204ENST00000563952 SCRG1O75711 98 aa29.73■■■□□ 2.35
CMTM4-204ENST00000563952 S1PR4O95977 384 aa29.73■■■□□ 2.35
CMTM4-204ENST00000563952 MT-ND3P03897 115 aa29.73■■■□□ 2.35
CMTM4-204ENST00000563952 PKMP14618 531 aaKnown RBP29.73■■■□□ 2.35
CMTM4-204ENST00000563952 PKLRP30613 574 aa29.73■■■□□ 2.35
CMTM4-204ENST00000563952 RAB28P51157 221 aa29.73■■■□□ 2.35
CMTM4-204ENST00000563952 KYNUQ16719 465 aa29.73■■■□□ 2.35
CMTM4-204ENST00000563952 SYDE1Q6ZW31 735 aaPredicted RBP29.73■■■□□ 2.35
CMTM4-204ENST00000563952 OR8K5Q8NH50 307 aa29.73■■■□□ 2.35
CMTM4-204ENST00000563952 NFS1Q9Y697 457 aa29.73■■■□□ 2.35
CMTM4-204ENST00000563952 TMEM150CB9EJG8 249 aa29.72■■■□□ 2.35
CMTM4-204ENST00000563952 E5RI56 91 aa29.72■■■□□ 2.35
CMTM4-204ENST00000563952 ITGB2P05107 769 aa29.72■■■□□ 2.35
CMTM4-204ENST00000563952 PGAM1P18669 254 aa29.72■■■□□ 2.35
CMTM4-204ENST00000563952 SLC1A2P43004 574 aa29.72■■■□□ 2.35
CMTM4-204ENST00000563952 DHX9Q08211 1270 aaKnown RBP29.72■■■□□ 2.35
CMTM4-204ENST00000563952 TTC23LQ6PF05 361 aa29.72■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms