RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 OR2A14Q96R47 310 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 TSGA10Q9BZW7 698 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 ING2Q9H160 280 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 PCDHGB7Q9Y5F8 929 aa16.65■□□□□ 0.26
VPS9D1-203ENST00000563798 CCDC78A2IDD5 438 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 E7EQ34 232 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 GOT2P00505 430 aaKnown RBP16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 CHRM5P08912 532 aaPredicted RBP16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 GRIA1P42261 906 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 DNAJC21Q5F1R6 531 aaKnown RBP16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 DRICH1Q6PGQ1 229 aaPredicted RBP16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 SLC22A15Q8IZD6 547 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 C19orf47Q8N9M1 422 aaKnown RBP16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 OR4L1Q8NH43 312 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 ZNF778Q96MU6 729 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 DHRS4Q9BTZ2 278 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 FAM60AQ9NP50 221 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 SLC2A6Q9UGQ3 507 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 SNX7Q9UNH6 387 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 ZNF148Q9UQR1 794 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 TCAF1Q9Y4C2 921 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 AP1M2Q9Y6Q5 423 aa16.64■□□□□ 0.25
VPS9D1-203ENST00000563798 PTPN13Q12923 2485 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 ZNF749O43361 778 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 KRT86O43790 486 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 KDM1AO60341 852 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 OR1I1O60431 355 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 GPC4O75487 556 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 PPARGP37231 505 aaPredicted RBP16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 PTGIRP43119 386 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 NCF4Q15080 339 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 SIX1Q15475 284 aaPredicted RBP16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 ZIC1Q15915 447 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 SLC5A12Q1EHB4 618 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 CPZQ66K79 652 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 PPP1R21Q6ZMI0 780 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 C1orf54Q8WWF1 131 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 SLC25A23Q9BV35 468 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 CARD6Q9BX69 1037 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 AP1M1Q9BXS5 423 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 ACSS2Q9NR19 701 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 EIF2B3Q9NR50 452 aaKnown RBP16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 RAB6BQ9NRW1 208 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 SPHK1Q9NYA1 384 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 PAK5Q9P286 719 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 CDYLQ9Y232 598 aa16.63■□□□□ 0.25
VPS9D1-203ENST00000563798 A0A0J9YY10 115 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 ARGFXA6NJG6 315 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 E7EVH7 732 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 IFNB1P01574 187 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 SPTBP11277 2137 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 CCR7P32248 378 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 PGDP52209 483 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 UBAP2LQ14157 1087 aaKnown RBP16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 KIR2DS3Q14952 304 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 CCNG2Q16589 344 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 KYNUQ16719 465 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 SYTL3Q4VX76 610 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 MEI1Q5TIA1 1274 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 RHBDD2Q6NTF9 364 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 MED25Q71SY5 747 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 HOOK3Q86VS8 718 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 HPS6Q86YV9 775 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 GPR135Q8IZ08 494 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 TMEM102Q8N9M5 508 aaPredicted RBP16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 GLIS1Q8NBF1 620 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 PROKR1Q8TCW9 393 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 ASZ1Q8WWH4 475 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 C17orf62Q9BQA9 187 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 MENTQ9BUN1 341 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 KLHL25Q9H0H3 589 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 ENAMQ9NRM1 1142 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 PLAAQ9Y263 795 aa16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 DRG1Q9Y295 367 aaKnown RBP16.62■□□□□ 0.25
VPS9D1-203ENST00000563798 RELNP78509 3460 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 KLF7O75840 302 aaPredicted RBP16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 TMEM63AO94886 807 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 SLCO2B1O94956 709 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 APRTP07741 180 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 CD63P08962 238 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 ETS1P14921 441 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 AGXTP21549 392 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 PEBP1P30086 187 aaKnown RBP16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 CCL11P51671 97 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 SRSF1Q07955 248 aaKnown RBP eCLIP16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 SEMA3AQ14563 771 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 BRD3Q15059 726 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 PTCHD3Q3KNS1 767 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 FASTKD1Q53R41 847 aaKnown RBP16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 AARS2Q5JTZ9 985 aaKnown RBP16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 PCID2Q5JVF3 399 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 C4orf22Q6V702 233 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 NAPRTQ6XQN6 538 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 ZNF662Q6ZS27 426 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 TRIM73Q86UV7 250 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 DNAJC22Q8N4W6 341 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 ZBTB2Q8N680 514 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 SPC24Q8NBT2 197 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 OR6P1Q8NGX9 317 aa16.61■□□□□ 0.25
VPS9D1-203ENST00000563798 TSSK1BQ9BXA7 367 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms