RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 LCN9Q8WX39 176 aa9.97□□□□□ -0.81
SF3B3-204ENST00000563739 PTERQ96BW5 349 aa9.97□□□□□ -0.81
SF3B3-204ENST00000563739 CNDP1Q96KN2 507 aa9.97□□□□□ -0.81
SF3B3-204ENST00000563739 TEKT5Q96M29 485 aa9.97□□□□□ -0.81
SF3B3-204ENST00000563739 TREX2Q9BQ50 279 aaPredicted RBP9.97□□□□□ -0.81
SF3B3-204ENST00000563739 HGH1Q9BTY7 390 aa9.97□□□□□ -0.81
SF3B3-204ENST00000563739 ZCCHC2Q9C0B9 1178 aaKnown RBP9.97□□□□□ -0.81
SF3B3-204ENST00000563739 SRMSQ9H3Y6 488 aa9.97□□□□□ -0.81
SF3B3-204ENST00000563739 COG4Q9H9E3 785 aa9.97□□□□□ -0.81
SF3B3-204ENST00000563739 IFT80Q9P2H3 777 aaPredicted RBP9.97□□□□□ -0.81
SF3B3-204ENST00000563739 CTSFQ9UBX1 484 aa9.97□□□□□ -0.81
SF3B3-204ENST00000563739 FKBPLQ9UIM3 349 aa9.97□□□□□ -0.81
SF3B3-204ENST00000563739 SERTAD3Q9UJW9 196 aa9.97□□□□□ -0.81
SF3B3-204ENST00000563739 IGLV3-16A0A075B6K0 115 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 PEX12O00623 359 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 OR2B3O76000 313 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 PRAMEF1O95521 474 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 HBQ1P09105 142 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 PRSS56P0CW18 603 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 AGXTP21549 392 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 AP1B1Q10567 949 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 MFAP5Q13361 173 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 SLC1A5Q15758 541 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 CYP2A13Q16696 494 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 TEX44Q53QW1 395 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 LINC00696Q6ZRV3 163 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 SHISA6Q6ZSJ9 500 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 PARP9Q8IXQ6 854 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 SLC25A41Q8N5S1 370 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 BCORP1Q8N888 145 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 FKBP10Q96AY3 582 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 MENTQ9BUN1 341 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 PACSIN1Q9BY11 444 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 SLC26A1Q9H2B4 701 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 ENAMQ9NRM1 1142 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 HEY1Q9Y5J3 304 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 ARL5AQ9Y689 179 aa9.96□□□□□ -0.82
SF3B3-204ENST00000563739 HCFC1P51610 2035 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 A0A0A6YYK5 440 aaPredicted RBP9.95□□□□□ -0.82
SF3B3-204ENST00000563739 VSTM2BA6NLU5 285 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 ZNF487B1APH4 448 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 KCNN4O15554 427 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 IGHEP01854 428 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 TPM2P07951 284 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 CELA2AP08217 269 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 COX6B1P14854 86 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 PECAM1P16284 738 aaPredicted RBP9.95□□□□□ -0.82
SF3B3-204ENST00000563739 CDK11BP21127 795 aaKnown RBP9.95□□□□□ -0.82
SF3B3-204ENST00000563739 MCM3P25205 808 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 AKT1P31749 480 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 CDKN1CP49918 316 aaPredicted RBP9.95□□□□□ -0.82
SF3B3-204ENST00000563739 TNFSF10P50591 281 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 PRKAA1Q13131 559 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 ITGA9Q13797 1035 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 IQCB1Q15051 598 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 TLR1Q15399 786 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 PPP2R5EQ16537 467 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 LONRF2Q1L5Z9 754 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 AGAP7PQ5VUJ5 663 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 FAM180AQ6UWF9 173 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 UNC5AQ6ZN44 842 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 GLT6D1Q7Z4J2 308 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 CDH24Q86UP0 819 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 AMIGO1Q86WK6 493 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 CHERPQ8IWX8 916 aaKnown RBP9.95□□□□□ -0.82
SF3B3-204ENST00000563739 CFAP206Q8IYR0 622 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 KCTD6Q8NC69 237 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 ANKRD20A12PQ8NF67 263 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 OR5AR1Q8NGP9 310 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 OR13C4Q8NGS5 318 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 ZNF398Q8TD17 642 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 BLOC1S5Q8TDH9 187 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 TTC25Q96NG3 672 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 ZNF285Q96NJ3 590 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 NAP1L5Q96NT1 182 aaPredicted RBP9.95□□□□□ -0.82
SF3B3-204ENST00000563739 AGAP4Q96P64 663 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 AP1M1Q9BXS5 423 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 LHPPQ9H008 270 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 TRABDQ9H4I3 376 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 SYNPO2LQ9H987 977 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 SAE1Q9UBE0 346 aaPredicted RBP9.95□□□□□ -0.82
SF3B3-204ENST00000563739 NDOR1Q9UHB4 597 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 KLHL20Q9Y2M5 609 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 AP1M2Q9Y6Q5 423 aa9.95□□□□□ -0.82
SF3B3-204ENST00000563739 FLNAP21333 2647 aaKnown RBP9.95□□□□□ -0.82
SF3B3-204ENST00000563739 NSD1Q96L73 2696 aaPredicted RBP9.95□□□□□ -0.82
SF3B3-204ENST00000563739 TRBV5-4A0A0C4DH59 114 aa9.94□□□□□ -0.82
SF3B3-204ENST00000563739 A0A1W2PQ72 361 aa9.94□□□□□ -0.82
SF3B3-204ENST00000563739 SMTNL1A8MU46 457 aa9.94□□□□□ -0.82
SF3B3-204ENST00000563739 C2orf74A8MZ97 194 aa9.94□□□□□ -0.82
SF3B3-204ENST00000563739 CCL22O00626 93 aa9.94□□□□□ -0.82
SF3B3-204ENST00000563739 NRP2O60462 931 aa9.94□□□□□ -0.82
SF3B3-204ENST00000563739 SRP72O76094 671 aaKnown RBP9.94□□□□□ -0.82
SF3B3-204ENST00000563739 CHRM5P08912 532 aaPredicted RBP9.94□□□□□ -0.82
SF3B3-204ENST00000563739 MSH3P20585 1137 aa9.94□□□□□ -0.82
SF3B3-204ENST00000563739 ACADLP28330 430 aa9.94□□□□□ -0.82
SF3B3-204ENST00000563739 PBX1P40424 430 aa9.94□□□□□ -0.82
SF3B3-204ENST00000563739 SSR1P43307 286 aaKnown RBP9.94□□□□□ -0.82
SF3B3-204ENST00000563739 ZNF140P52738 457 aaPredicted RBP9.94□□□□□ -0.82
SF3B3-204ENST00000563739 PMP22Q01453 160 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms