RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 PARVBQ9HBI1 364 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 UTP6Q9NYH9 597 aaKnown RBP16.15■□□□□ 0.18
VPS4A-202ENST00000562754 CPSF2Q9P2I0 782 aaKnown RBP16.15■□□□□ 0.18
VPS4A-202ENST00000562754 GRID1Q9ULK0 1009 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 RNF112Q9ULX5 631 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 OARD1Q9Y530 152 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 HEBP2Q9Y5Z4 205 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 ASCC3Q8N3C0 2202 aaKnown RBP16.14■□□□□ 0.17
VPS4A-202ENST00000562754 CCDC189A1A4V9 331 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 UBXN8O00124 270 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 ENO2P09104 434 aaPredicted RBP16.14■□□□□ 0.17
VPS4A-202ENST00000562754 RBP1P09455 135 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 TPBGLP0DKB5 382 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 MTHFD2P13995 350 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 XRCC1P18887 633 aaPredicted RBP16.14■□□□□ 0.17
VPS4A-202ENST00000562754 CYP2A7P20853 494 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 HPDP32754 393 aaPredicted RBP16.14■□□□□ 0.17
VPS4A-202ENST00000562754 PRKG2Q13237 762 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 HSP90B2PQ58FF3 399 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 PRR23CQ6ZRP0 262 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 ASCL5Q7RTU5 278 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 GPSM1Q86YR5 675 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 TBC1D21Q8IYX1 336 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 STAG3L4Q8TBR4 150 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 MAPK15Q8TD08 544 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 SELENOSQ9BQE4 189 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 IQCGQ9H095 443 aaKnown RBP16.14■□□□□ 0.17
VPS4A-202ENST00000562754 MVB12BQ9H7P6 319 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 RDH14Q9HBH5 336 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 KCNK9Q9NPC2 374 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 POT1Q9NUX5 634 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 CPNE7Q9UBL6 633 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 PLAGL1Q9UM63 463 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 BTBD3Q9Y2F9 522 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 PCDHGB2Q9Y5G2 931 aa16.14■□□□□ 0.17
VPS4A-202ENST00000562754 DMDP11532 3685 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 LY6G6EA0A0G2JKS1 128 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 SUPT3HB4E1H0 165 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 MYO1CO00159 1063 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 SIGLEC6O43699 453 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 SUPT3HO75486 399 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 RPN2P04844 631 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 ETV4P43268 484 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 TGFBIQ15582 683 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 CCDC153Q494R4 210 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 C14orf28Q4W4Y0 310 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.13■□□□□ 0.17
VPS4A-202ENST00000562754 FRA10AC1Q70Z53 315 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 TRIM48Q8IWZ4 208 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 ARL14Q8N4G2 192 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 EID2Q8N6I1 236 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 ARL10Q8N8L6 244 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 ARMC2Q8NEN0 867 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 MCOLN3Q8TDD5 553 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 DENND1AQ8TEH3 1009 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 JPH3Q8WXH2 748 aaPredicted RBP16.13■□□□□ 0.17
VPS4A-202ENST00000562754 CAMK1GQ96NX5 476 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 PKP4Q99569 1192 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 MENTQ9BUN1 341 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 KIR3DX1Q9H7L2 352 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 SLC40A1Q9NP59 571 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 NUDT4Q9NZJ9 180 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 TDRKHQ9Y2W6 561 aaKnown RBP16.13■□□□□ 0.17
VPS4A-202ENST00000562754 U3KQA8 63 aa16.13■□□□□ 0.17
VPS4A-202ENST00000562754 MYO15AQ9UKN7 3530 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 NCF1BA6NI72 391 aaPredicted RBP16.12■□□□□ 0.17
VPS4A-202ENST00000562754 NCF1CA8MVU1 366 aaPredicted RBP16.12■□□□□ 0.17
VPS4A-202ENST00000562754 G3V2L1 256 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 GUCA1CO95843 209 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 VIPP01282 170 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 ALPPL2P10696 532 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 MYF5P13349 255 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 NCF1P14598 390 aaPredicted RBP16.12■□□□□ 0.17
VPS4A-202ENST00000562754 MAP4P27816 1152 aaKnown RBP16.12■□□□□ 0.17
VPS4A-202ENST00000562754 NDUFS1P28331 727 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 FASLGP48023 281 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 RPIAP49247 311 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 CDKL1Q00532 357 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 HHEXQ03014 270 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 GPS2Q13227 327 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 GPR18Q14330 331 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 ZCCHC8Q6NZY4 707 aaKnown RBP16.12■□□□□ 0.17
VPS4A-202ENST00000562754 ZYG11AQ6WRX3 759 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 SLC9B2Q86UD5 537 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 ANKRD42Q8N9B4 389 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 LMNTD1Q8N9Z9 388 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 OR52E1Q8NGJ3 308 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 OR9A1PQ8NGU1 263 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 IL17FQ96PD4 163 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 DUSP23Q9BVJ7 150 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 TMEM9BQ9NQ34 198 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 ICKQ9UPZ9 632 aa16.12■□□□□ 0.17
VPS4A-202ENST00000562754 COL5A1P20908 1838 aaPredicted RBP16.11■□□□□ 0.17
VPS4A-202ENST00000562754 A8MT66 165 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 PPM1DO15297 605 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 TM9SF1O15321 606 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 KLK8O60259 260 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 DLX3O60479 287 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 ZWINTO95229 277 aa16.11■□□□□ 0.17
VPS4A-202ENST00000562754 DHRS4L1P0CG22 281 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms