RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 INTS10Q9NVR2 710 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 C2orf42Q9NWW7 574 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FTSJ1Q9UET6 329 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RPL26L1Q9UNX3 145 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FADS3Q9Y5Q0 445 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 COL4A6Q14031 1691 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 CCDC22O60826 627 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 PDE5AO76074 875 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 UBOX5O94941 541 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FKBP9O95302 570 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FAM107AO95990 144 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 SLC35E2BP0CK96 405 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 PSMB5P28074 263 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 GABRB3P28472 473 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 CCR7P32248 378 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 PTGER1P34995 402 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 MAPK10P53779 464 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 ARHGAP8P85298 464 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FCHO2Q0JRZ9 810 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 NAB1Q13506 487 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 PNCKQ6P2M8 343 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 CYP20A1Q6UW02 462 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FKBP9P1Q75LS8 142 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 TRPM8Q7Z2W7 1104 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 LMNTD2Q8IXW0 634 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 DSELQ8IZU8 1212 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RNF175Q8N4F7 328 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 TRAM1L1Q8N609 369 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 CKAP2Q8WWK9 683 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RTP4Q96DX8 246 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 BBS4Q96RK4 519 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 GSDMCQ9BYG8 508 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 CPEB1Q9BZB8 566 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 STARD5Q9NSY2 213 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 AKAP7Q9P0M2 348 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 TNPO3Q9Y5L0 923 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 DGKBQ9Y6T7 804 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF638Q14966 1978 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 TRPC5OSA6NMA1 111 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FADS2P1A8MWK0 482 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 LOC730098B7Z3J9 87 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 BCAT2O15382 392 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RFPL1O75677 317 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 OTCP00480 354 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 CDH1P12830 882 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 COX7A2P14406 83 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 EPORP19235 508 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 VARSP26640 1264 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 CRHR1P34998 444 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 PGM1P36871 562 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 MMP12P39900 470 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 ST13P50502 369 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 HHEXQ03014 270 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 NFYCQ13952 458 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 SMAD2Q15796 467 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 ADHFE1Q8IWW8 467 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 KRT78Q8N1N4 520 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 PELI3Q8N2H9 469 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 SDR16C5Q8N3Y7 309 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 EID2Q8N6I1 236 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 BANPQ8N9N5 519 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 EIF1ADQ8N9N8 165 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 OR52B6Q8NGF0 335 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 DNAJB14Q8TBM8 379 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 EXOSC8Q96B26 276 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 SLC45A3Q96JT2 553 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 GUCD1Q96NT3 240 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 WDR83Q9BRX9 315 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 NUSAP1Q9BXS6 441 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 MRPL1Q9BYD6 325 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RUBCNLQ9H714 662 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 PDFQ9HBH1 243 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 MRPS30Q9NP92 439 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 SLC2A4RGQ9NR83 387 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 TXLNGQ9NUQ3 528 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 MOCS1Q9NZB8 636 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RNF11Q9Y3C5 154 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 TDRD6O60522 2096 aaKnown RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 PIPSLA2A3N6 862 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 TMEM247A6NEH6 219 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 PIP5K1BO14986 540 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 PI15O43692 258 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 GPR37L1O60883 481 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 CD160O95971 181 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 RECKO95980 971 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 AQP1P29972 269 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 CHI3L1P36222 383 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 PRIM2P49643 509 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 CCR3P51677 355 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF140P52738 457 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 SRP54P61011 504 aaKnown RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 TP53BP2Q13625 1128 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 FASTKQ14296 549 aaKnown RBP5.31□□□□□ -1.56
VPS13C-209ENST00000560637 ACAP2Q15057 778 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 OR4D1Q15615 310 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 CCSMST1Q4G0I0 132 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 PAGE2BQ5JRK9 111 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 SHISA6Q6ZSJ9 500 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 GALNT10Q86SR1 603 aa5.31□□□□□ -1.56
VPS13C-209ENST00000560637 VRK3Q8IV63 474 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms