RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 I3L1I5 382 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 CCL24O00175 119 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 PSMD14O00487 310 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 WDR46O15213 610 aaKnown RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 TSPAN1O60635 241 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GAGE7O76087 117 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 SIX3O95343 332 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 ZBTB11O95625 1053 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 GLUD1P00367 558 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GSRP00390 522 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 IGHV2-70P01814 119 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 PRSS2P07478 247 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 HOXC6P09630 235 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GAGE12FP0CL80 117 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GAGE12GP0CL81 117 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GAGE12IP0CL82 117 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 SNHG28P0DPA3 235 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CDH1P12830 882 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CKMT2P17540 419 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GM2AP17900 193 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 MCCP23508 829 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CDC25CP30307 473 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 PTGER4P35408 488 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 TCF7P36402 384 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 HNF4AP41235 474 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 NKX2-1P43699 371 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 ARCN1P48444 511 aaKnown RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 LHX1P48742 406 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GLUD2P49448 558 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 HTR6P50406 440 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 PLCD1P51178 756 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 FUT6P51993 359 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 PGGT1BP53609 377 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 LIMK1P53667 647 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 YBEYP58557 167 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 B3GALT5-AS1P59052 145 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 MBTD1Q05BQ5 628 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 COASYQ13057 564 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GAGE1Q13065 139 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GAGE4Q13068 117 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GTF2H2Q13888 395 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 RCN2Q14257 317 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 LASP1Q14847 261 aaKnown RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 NR1D2Q14995 579 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 SF3B4Q15427 424 aaKnown RBP eCLIP1.55□□□□□ -2.166e-7■■■■□ 21
USP3-209ENST00000558925 HLFQ16534 295 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CA9Q16790 459 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 MEP1BQ16820 701 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CTU2Q2VPK5 515 aaKnown RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 ANKRD20A4Q4UJ75 823 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 TMEM35AQ53FP2 167 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 LACTB2Q53H82 288 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 SYT14P1Q58G82 188 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 ANKRD20A8PQ5CZ79 823 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CCDC158Q5M9N0 1113 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 ANKRD20A2Q5SQ80 823 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 ANKRD20A1Q5TYW2 823 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 ANKRD20A3Q5VUR7 823 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 SUSD4Q5VX71 490 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 SHEQ5VZ18 495 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 GTF2H2CQ6P1K8 395 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 PLBD1Q6P4A8 553 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CYB5D1Q6P9G0 228 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 PODNL1Q6PEZ8 512 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 IYDQ6PHW0 289 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 MOXD1Q6UVY6 613 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 PRSS55Q6UWB4 352 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 LIN28BQ6ZN17 250 aaKnown RBP eCLIP1.55□□□□□ -2.16
USP3-209ENST00000558925 GBP6Q6ZN66 633 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 Q6ZTC4 211 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 ANO5Q75V66 913 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 SPATA21Q7Z572 469 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 SLC9B2Q86UD5 537 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CREBRFQ8IUR6 639 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 TUSC5Q8IXB3 177 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 KLHL7Q8IXQ5 586 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 MMD2Q8IY49 270 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 FBXL14Q8N1E6 418 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 BMPERQ8N8U9 685 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 TRIML1Q8N9V2 468 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 LMNTD1Q8N9Z9 388 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 L3MBTL4Q8NA19 623 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 KBTBD3Q8NAB2 608 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 PAPD5Q8NDF8 572 aaKnown RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 OR11H4Q8NGC9 324 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 OR13J1Q8NGT2 312 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CTCFLQ8NI51 663 aaPredicted RBP1.55□□□□□ -2.16
USP3-209ENST00000558925 RNF128Q8TEB7 428 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 TMEM255BQ8WV15 326 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 SSMEM1Q8WWF3 244 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 SEPT1Q8WYJ6 367 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 NEUROG1Q92886 237 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 HES6Q96HZ4 224 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 ZNF479Q96JC4 524 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 ADGRG7Q96K78 797 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CABS1Q96KC9 395 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 RMDN2Q96LZ7 410 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 LRRC3BQ96PB8 259 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 CCDC3Q9BQI4 270 aa1.55□□□□□ -2.16
USP3-209ENST00000558925 INPP5KQ9BT40 448 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms