RNA–Protein interactions for RNA: ENST00000554813.5

APEX1-208, Transcript of apurinic/apyrimidinic endodeoxyribonuclease 1, human

TSL 3

Gene APEX1, Length 654 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APEX1-208	ENST00000554813	NKD1	Q969G9	470 aa		12.84	□□□□□ -0.35
APEX1-208	ENST00000554813	LRRC39	Q96DD0	335 aa		12.84	□□□□□ -0.35
APEX1-208	ENST00000554813	CRELD1	Q96HD1	420 aa		12.84	□□□□□ -0.35
APEX1-208	ENST00000554813	FOPNL	Q96NB1	174 aa		12.84	□□□□□ -0.35
APEX1-208	ENST00000554813	SPRY4	Q9C004	299 aa		12.84	□□□□□ -0.35
APEX1-208	ENST00000554813	CPNE5	Q9HCH3	593 aa		12.84	□□□□□ -0.35
APEX1-208	ENST00000554813	LATS2	Q9NRM7	1088 aa		12.84	□□□□□ -0.35
APEX1-208	ENST00000554813	PILRA	Q9UKJ1	303 aa		12.84	□□□□□ -0.35
APEX1-208	ENST00000554813	FBXO5	Q9UKT4	447 aa		12.84	□□□□□ -0.35
APEX1-208	ENST00000554813	ICK	Q9UPZ9	632 aa		12.84	□□□□□ -0.35
APEX1-208	ENST00000554813	COMMD10	Q9Y6G5	202 aa		12.84	□□□□□ -0.35
APEX1-208	ENST00000554813	SLC9B1P1	A6NJY1	282 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813		K7ENP7	123 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	RAD1	O60671	282 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	NIPSNAP2	O75323	286 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	STK17B	O94768	372 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	FOLR1	P15328	257 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	ATP5D	P30049	168 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	TUBB3	Q13509	450 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	KCNAB1	Q14722	419 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	CRYM	Q14894	314 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	ZNF789	Q5FWF6	425 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	ARHGAP40	Q5TG30	622 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	INO80C	Q6PI98	192 aa	Predicted RBP	12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	KCNMB4	Q86W47	210 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	DCUN1D3	Q8IWE4	304 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	DENND6A	Q8IWF6	608 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	NLGN4X	Q8N0W4	816 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	D2HGDH	Q8N465	521 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	ZBTB2	Q8N680	514 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	MAGEC3	Q8TD91	643 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	ELMO2	Q96JJ3	720 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	FCRL4	Q96PJ5	515 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	ULBP3	Q9BZM4	244 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	FBXO6	Q9NRD1	293 aa	Predicted RBP	12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	FGF21	Q9NSA1	209 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	IARS2	Q9NSE4	1012 aa	Known RBP	12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	SOHLH2	Q9NX45	425 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	ACTR10	Q9NZ32	417 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	ZC3H7B	Q9UGR2	993 aa	Known RBP	12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	RARRES3	Q9UL19	164 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	SNX24	Q9Y343	169 aa		12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	TMEM184B	Q9Y519	407 aa	Predicted RBP	12.83	□□□□□ -0.36
APEX1-208	ENST00000554813	TEX51	A0A1B0GUA7	166 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	BANF1	O75531	89 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	SPAG6	O75602	509 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	HAUS5	O94927	633 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	CHRM5	P08912	532 aa	Predicted RBP	12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	EBLN1	P0CF75	366 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	TPBGL	P0DKB5	382 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	ERVK-10	P10266	1014 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	CCNF	P41002	786 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	ELK3	P41970	407 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	SLC1A2	P43004	574 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	RPL21	P46778	160 aa	Known RBP	12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	RAB28	P51157	221 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	TUBB4B	P68371	445 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	CALCOCO2	Q13137	446 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	TUBB2A	Q13885	445 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	KIR2DS3	Q14952	304 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	KYNU	Q16719	465 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	TTLL9	Q3SXZ7	439 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	SPESP1	Q6UW49	350 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	IGDCC3	Q8IVU1	814 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	UNC5B	Q8IZJ1	945 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	RAB42	Q8N4Z0	105 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	OR8K5	Q8NH50	307 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	SNRNP27	Q8WVK2	155 aa	Known RBP	12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	RAD51AP1	Q96B01	352 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	SLC22A18	Q96BI1	424 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	FAM136A	Q96C01	138 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	PPM1M	Q96MI6	270 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	NRTN	Q99748	197 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	ERP44	Q9BS26	406 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	TUBB2B	Q9BVA1	445 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	PITPNM3	Q9BZ71	974 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	SYTL2	Q9HCH5	934 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	PPAN	Q9NQ55	473 aa	Known RBP	12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	KLHL42	Q9P2K6	505 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	SLC39A10	Q9ULF5	831 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	BTRC	Q9Y297	605 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	TEX264	Q9Y6I9	313 aa		12.82	□□□□□ -0.36
APEX1-208	ENST00000554813	ISM1	B1AKI9	464 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	EFS	O43281	561 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	MATN4	O95460	622 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	C1orf105	O95561	183 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	TUBB4A	P04350	444 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	CCNYL3	P0C7X3	344 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	UGT2B7	P16662	529 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	CD9	P21926	228 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	CKAP4	Q07065	602 aa	Known RBP	12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	C2orf54	Q08AI8	447 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	MAP7	Q14244	749 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	GBX1	Q14549	363 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	FBXO38	Q6PIJ6	1188 aa		12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	C6orf15	Q6UXA7	325 aa	Predicted RBP	12.81	□□□□□ -0.36
APEX1-208	ENST00000554813	KIAA0408	Q6ZU52	694 aa		12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms