RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 CCT6BQ92526 530 aa12.17□□□□□ -0.46
SHMT2-214ENST00000554604 ZNF75CPQ92670 426 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-214ENST00000554604 USP7Q93009 1102 aa12.17□□□□□ -0.46
SHMT2-214ENST00000554604 ZNF669Q96BR6 464 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-214ENST00000554604 UBL7Q96S82 380 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-214ENST00000554604 CPNE1Q99829 537 aa12.17□□□□□ -0.46
SHMT2-214ENST00000554604 TBL1YQ9BQ87 522 aa12.17□□□□□ -0.46
SHMT2-214ENST00000554604 IQCGQ9H095 443 aaKnown RBP12.17□□□□□ -0.46
SHMT2-214ENST00000554604 EPB41L1Q9H4G0 881 aa12.17□□□□□ -0.46
SHMT2-214ENST00000554604 ACTR5Q9H9F9 607 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-214ENST00000554604 MRM3Q9HC36 420 aaKnown RBP12.17□□□□□ -0.46
SHMT2-214ENST00000554604 SLC17A7Q9P2U7 560 aa12.17□□□□□ -0.46
SHMT2-214ENST00000554604 ARL2BPQ9Y2Y0 163 aa12.17□□□□□ -0.46
SHMT2-214ENST00000554604 ATMQ13315 3056 aa12.17□□□□□ -0.46
SHMT2-214ENST00000554604 ZCWPW2A0A1B0GU75 182 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 TEX51A0A1B0GUA7 166 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 A8MU76 341 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 GPR39O43194 453 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 KCNJ13O60928 360 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 THRAP10827 490 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 CCL4P13236 92 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 XRCC1P18887 633 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-214ENST00000554604 MSH3P20585 1137 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 CRHR1P34998 444 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 GP5P40197 560 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 HALP42357 657 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 CFHR1Q03591 330 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 VAC14Q08AM6 782 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 CLN3Q13286 438 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 ZKSCAN8Q15776 578 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-214ENST00000554604 DBN1Q16643 649 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 SOWAHCQ53LP3 525 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-214ENST00000554604 GPRC6AQ5T6X5 926 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 GRTP1Q5TC63 336 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 CGB2Q6NT52 195 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 CCDC81Q6ZN84 652 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 AMZ2Q86W34 360 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 FAM129CQ86XR2 697 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 TRIM42Q8IWZ5 723 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 UNC5BQ8IZJ1 945 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 RASGEF1AQ8N9B8 481 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 DDHD1Q8NEL9 900 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 CXorf40BQ96DE9 158 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 CCNL2Q96S94 520 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-214ENST00000554604 KIFC1Q9BW19 673 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 ASB8Q9H765 288 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 PIH1D1Q9NWS0 290 aaKnown RBP12.16□□□□□ -0.46
SHMT2-214ENST00000554604 NSMCE4AQ9NXX6 385 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 TMEM9Q9P0T7 183 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 ZFATQ9P243 1243 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 ACSL6Q9UKU0 697 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 PLLPQ9Y342 182 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 PCDHB11Q9Y5F2 797 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 KALRNO60229 2985 aa12.16□□□□□ -0.46
SHMT2-214ENST00000554604 LILRA5A6NI73 299 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 OR2AG2A6NM03 316 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 GAPDHSO14556 408 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-214ENST00000554604 KLF11O14901 512 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 POP7O75817 140 aaKnown RBP12.15□□□□□ -0.46
SHMT2-214ENST00000554604 SRP72O76094 671 aaKnown RBP12.15□□□□□ -0.46
SHMT2-214ENST00000554604 GSTA1P08263 222 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 LIPCP11150 499 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 CD82P27701 267 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 PBLDP30039 288 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-214ENST00000554604 HADHAP40939 763 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 SLC19A1P41440 591 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 CSE1LP55060 971 aaKnown RBP12.15□□□□□ -0.46
SHMT2-214ENST00000554604 UBE2IP63279 158 aaKnown RBP12.15□□□□□ -0.46
SHMT2-214ENST00000554604 BMPR2Q13873 1038 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 PCID2Q5JVF3 399 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 RNF187Q5TA31 235 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-214ENST00000554604 MROH9Q5TGP6 573 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 AGAP9Q5VTM2 703 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 DENND5AQ6IQ26 1287 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 TMEM220Q6QAJ8 160 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 TMEM26Q6ZUK4 368 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 PLXDC1Q8IUK5 500 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 ISL2Q96A47 359 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 DCUN1D1Q96GG9 259 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 ZNF514Q96K75 400 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-214ENST00000554604 FAM111AQ96PZ2 611 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 TAAR9Q96RI9 348 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 RBBP8Q99708 897 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 TBC1D10AQ9BXI6 508 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 B3GNT4Q9C0J1 378 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 MANSC1Q9H8J5 431 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 UCK1Q9HA47 277 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 ARNT2Q9HBZ2 717 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 SMOXQ9NWM0 555 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 FOXJ2Q9P0K8 574 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 SCHIP1Q9P0W5 487 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-214ENST00000554604 TXNDC16Q9P2K2 825 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 KLHL3Q9UH77 587 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 FKBPLQ9UIM3 349 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 CRLS1Q9UJA2 301 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 KCTD3Q9Y597 815 aa12.15□□□□□ -0.46
SHMT2-214ENST00000554604 OR52A4PA6NMU1 304 aa12.14□□□□□ -0.47
SHMT2-214ENST00000554604 EFCAB7A8K855 629 aa12.14□□□□□ -0.47
SHMT2-214ENST00000554604 C9orf172C9J069 976 aa12.14□□□□□ -0.47
SHMT2-214ENST00000554604 GLRA3O75311 464 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms