RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 DNAJC11Q9NVH1 559 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 GID8Q9NWU2 228 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 TMEM181Q9P2C4 612 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 MAP10Q9P2G4 905 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 KLQ9UEF7 1012 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 LRRK1Q38SD2 2015 aa25.7■■□□□ 1.71
CCDC88C-205ENST00000553403 ULK1O75385 1050 aa25.7■■□□□ 1.7
CCDC88C-205ENST00000553403 TNFRSF4P43489 277 aa25.7■■□□□ 1.7
CCDC88C-205ENST00000553403 AP5B1Q2VPB7 878 aa25.7■■□□□ 1.7
CCDC88C-205ENST00000553403 VPS26BQ4G0F5 336 aa25.7■■□□□ 1.7
CCDC88C-205ENST00000553403 ATL1Q8WXF7 558 aa25.7■■□□□ 1.7
CCDC88C-205ENST00000553403 GPATCH1Q9BRR8 931 aaKnown RBP25.7■■□□□ 1.7
CCDC88C-205ENST00000553403 C1orf50Q9BV19 199 aa25.7■■□□□ 1.7
CCDC88C-205ENST00000553403 ACTR8Q9H981 624 aa25.7■■□□□ 1.7
CCDC88C-205ENST00000553403 SUCOQ9UBS9 1254 aaKnown RBP25.7■■□□□ 1.7
CCDC88C-205ENST00000553403 A0A1W2PP18 115 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 DYTNA2CJ06 578 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 FAM234BA2RU67 622 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 LIN7AO14910 233 aaPredicted RBP25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 AP1G1O43747 822 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 LILRB5O75023 590 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 BCAS2O75934 225 aaPredicted RBP25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 KRT6AP02538 564 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 CATP04040 527 aaKnown RBP25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 KRT6BP04259 564 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 ZFP36L2P47974 494 aaKnown RBP25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 KRT6CP48668 564 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 ABRQ12979 859 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 MAD2L1Q13257 205 aaPredicted RBP25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 CAMK2GQ13555 558 aaPredicted RBP25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 GTF2H3Q13889 308 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 FLOT2Q14254 428 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 MTSS1LQ765P7 747 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 KLHDC8AQ8IYD2 350 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 L3MBTL4Q8NA19 623 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 NRG4Q8WWG1 115 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 LINC00615Q96LM1 132 aaPredicted RBP25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 CCDC138Q96M89 665 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 RSPH9Q9H1X1 276 aaPredicted RBP25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 ZDHHC4Q9NPG8 344 aa25.69■■□□□ 1.7
CCDC88C-205ENST00000553403 ANTXRLA6NF34 631 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 ARHGEF33A8MVX0 844 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 K7ESM1 405 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 VEGFDO43915 354 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 ERFP50548 548 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 UFM1P61960 85 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 FOXM1Q08050 763 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 SAMD4BQ5PRF9 694 aaKnown RBP25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 MINDY1Q8N5J2 469 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 PPFIBP2Q8ND30 876 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 PYDC1Q8WXC3 89 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 FOPNLQ96NB1 174 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 RPP25Q9BUL9 199 aaKnown RBP25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 CD300AQ9UGN4 299 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 ZNF490Q9ULM2 529 aaPredicted RBP25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 ACOT8O14734 319 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 FFAR3O14843 346 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 GPR42O15529 346 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 RNASEH1O60930 286 aaKnown RBP25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 POLR2JP52435 117 aaKnown RBP25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 NEK5Q6P3R8 708 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 LAYNQ6UX15 382 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 GALNT13Q8IUC8 556 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 PHF6Q8IWS0 365 aaKnown RBP eCLIP25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 ASB9Q96DX5 294 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 OR2AG1Q9H205 316 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 ASIC5Q9NY37 505 aa25.68■■□□□ 1.7
CCDC88C-205ENST00000553403 KCNE1BA0A087WTH5 132 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 C17orf113A0A1B0GUU1 675 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 NVLO15381 856 aaKnown RBP25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 EEDO75530 441 aaKnown RBP25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 BAG2O95816 211 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 ADH1BP00325 375 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 DRD3P35462 400 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 PREPP48147 710 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 MS4A2Q01362 244 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 TRAP1Q12931 704 aaKnown RBP25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 CST6Q15828 149 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 CMPK2Q5EBM0 449 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 IL23RQ5VWK5 629 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 ADAMTSL4Q6UY14 1074 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 CHPFQ8IZ52 775 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 FBXO15Q8NCQ5 510 aaPredicted RBP25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 HIPK4Q8NE63 616 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 TEX37Q96LM6 180 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 FAM8A1Q9UBU6 413 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 LEF1Q9UJU2 399 aaPredicted RBP25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 SNX6Q9UNH7 406 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 GPR34Q9UPC5 381 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 MYO9BQ13459 2157 aa25.67■■□□□ 1.7
CCDC88C-205ENST00000553403 GRXCR2A6NFK2 248 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 IFRD1O00458 451 aaPredicted RBP25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 GNPDA1P46926 289 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 GALK1P51570 392 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 PFN3P60673 137 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 PLOD1Q02809 727 aaPredicted RBP25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 TRIM25Q14258 630 aaKnown RBP25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 EEF1AKMT2Q5JPI9 291 aaKnown RBP25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 ZFP1Q6P2D0 407 aa25.66■■□□□ 1.7
CCDC88C-205ENST00000553403 CYP20A1Q6UW02 462 aa25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms