RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 MTFMTQ96DP5 389 aaKnown RBP12.42□□□□□ -0.42
VPS29-211ENST00000553128 LINC00615Q96LM1 132 aaPredicted RBP12.42□□□□□ -0.42
VPS29-211ENST00000553128 LMF1Q96S06 567 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 OR52A5Q9H2C5 316 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 HSD3B7Q9H2F3 369 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 GLOD4Q9HC38 313 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 SMOXQ9NWM0 555 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 CTSFQ9UBX1 484 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 IP6K2Q9UHH9 426 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 MYO6Q9UM54 1294 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 ICKQ9UPZ9 632 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 HEY1Q9Y5J3 304 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 HEBP2Q9Y5Z4 205 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 ABCA2Q9BZC7 2435 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 LOC285095A0A1B0GVY8 99 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 LRRC10BA6NIK2 292 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 PRAMEF1O95521 474 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 CD68P34810 354 aaPredicted RBP12.41□□□□□ -0.42
VPS29-211ENST00000553128 PRKCIP41743 596 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 ITGA9Q13797 1035 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 SLC14A2Q15849 920 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 C3AR1Q16581 482 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 ZNF658BQ4V348 819 aaPredicted RBP12.41□□□□□ -0.42
VPS29-211ENST00000553128 CCDC70Q6NSX1 233 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 MTFR2Q6P444 385 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 KDELC1Q6UW63 502 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 TTLL10Q6ZVT0 673 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 OVCH1Q7RTY7 1134 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 CEP97Q8IW35 865 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 DNAJC22Q8N4W6 341 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 ZNF398Q8TD17 642 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 BLOC1S5Q8TDH9 187 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 ADAMTS18Q8TE60 1221 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 CPLX3Q8WVH0 158 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 PSMF1Q92530 271 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 RAPGEF5Q92565 580 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 NACC2Q96BF6 587 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 CCM2Q9BSQ5 444 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 NUP62CLQ9H1M0 184 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 MCCC2Q9HCC0 563 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 ZNF160Q9HCG1 818 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 SEMA3GQ9NS98 782 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 IRAK4Q9NWZ3 460 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 AIPL1Q9NZN9 384 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 SEC14L3Q9UDX4 400 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 TINAGQ9UJW2 476 aa12.41□□□□□ -0.42
VPS29-211ENST00000553128 NCOA6Q14686 2063 aaPredicted RBP12.41□□□□□ -0.42
VPS29-211ENST00000553128 TPBGLP0DKB5 382 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 CDK11BP21127 795 aaKnown RBP12.4□□□□□ -0.42
VPS29-211ENST00000553128 SOX11P35716 441 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 WNT3AP56704 352 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 PMP22Q01453 160 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 KLHL30Q0D2K2 578 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 PDK2Q15119 407 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 RBBP7Q16576 425 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 HADHQ16836 314 aaKnown RBP12.4□□□□□ -0.42
VPS29-211ENST00000553128 ZDHHC20Q5W0Z9 365 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 TLDC1Q6P9B6 456 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 UNC5AQ6ZN44 842 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 GLT6D1Q7Z4J2 308 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 METTL27Q8N6F8 245 aaPredicted RBP12.4□□□□□ -0.42
VPS29-211ENST00000553128 HM13Q8TCT9 377 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 FKBP10Q96AY3 582 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 C8orf44Q96CB5 159 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 ZNF830Q96NB3 372 aaPredicted RBP12.4□□□□□ -0.42
VPS29-211ENST00000553128 RNF157Q96PX1 679 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 SRPK1Q96SB4 655 aaKnown RBP12.4□□□□□ -0.42
VPS29-211ENST00000553128 TMUB1Q9BVT8 246 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 TRABDQ9H4I3 376 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 WDR54Q9H977 334 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 COG4Q9H9E3 785 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 ABI3Q9P2A4 366 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 PTGFRNQ9P2B2 879 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 KLHL20Q9Y2M5 609 aa12.4□□□□□ -0.42
VPS29-211ENST00000553128 MAP1AP78559 2803 aaPredicted RBP12.4□□□□□ -0.42
VPS29-211ENST00000553128 A0A0A6YYK5 440 aaPredicted RBP12.39□□□□□ -0.43
VPS29-211ENST00000553128 TRAV17A0A0B4J275 112 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 MYO1FO00160 1098 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 SLC19A2O60779 497 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 CLDN14O95500 239 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 CYP1A2P05177 515 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 CELA2AP08217 269 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 CD1EP15812 388 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 MCM3P25205 808 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 PTPN3P26045 913 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 PEBP1P30086 187 aaKnown RBP12.39□□□□□ -0.43
VPS29-211ENST00000553128 OR1D4P47884 311 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 PRLHRP49683 370 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 ART1P52961 327 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 CSNK1G2P78368 415 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 BOP1Q14137 746 aaKnown RBP12.39□□□□□ -0.43
VPS29-211ENST00000553128 TEX44Q53QW1 395 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 SARM1Q6SZW1 724 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 HOOK3Q86VS8 718 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 SIRT6Q8N6T7 355 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 ACBD4Q8NC06 268 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 OR5AR1Q8NGP9 310 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 BRIX1Q8TDN6 353 aaKnown RBP12.39□□□□□ -0.43
VPS29-211ENST00000553128 CHTF18Q8WVB6 975 aa12.39□□□□□ -0.43
VPS29-211ENST00000553128 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms