RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 DUSP11O75319 330 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 VPS26AO75436 327 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 HIST1H2AGP0C0S8 130 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PRR23D2P0DMB1 279 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 IRF1P10914 325 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 HIST1H2ADP20671 130 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 TKTP29401 623 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CAPGP40121 348 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 BMXP51813 675 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 RPL38P63173 70 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PMS2P3Q13401 168 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 TUBB3Q13509 450 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 KCNJ11Q14654 390 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CPSF6Q16630 551 aaKnown RBP eCLIP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ZSWIM7Q19AV6 140 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 INSCQ1MX18 579 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 NOMO2Q5JPE7 1267 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PCID2Q5JVF3 399 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 C10orf120Q5SQS8 335 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PRMT9Q6P2P2 845 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 NEK5Q6P3R8 708 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 NAPRTQ6XQN6 538 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 EFL1Q7Z2Z2 1120 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 C11orf96Q7Z7L8 435 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SPATA2LQ8IUW3 424 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 ADHFE1Q8IWW8 467 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 TBC1D21Q8IYX1 336 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 THEM5Q8N1Q8 247 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 OR52J3Q8NH60 311 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 OR10A6Q8NH74 314 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 HIST1H2AHQ96KK5 128 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 TOX2Q96NM4 488 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 HIST1H2AJQ99878 128 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 APOL4Q9BPW4 351 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 KCNS3Q9BQ31 491 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 H2AFJQ9BTM1 129 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PRDM6Q9NQX0 595 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 PRDM5Q9NQX1 630 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 DDX43Q9NXZ2 648 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 MTRRQ9UBK8 725 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SLC9A8Q9Y2E8 581 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 SAMHD1Q9Y3Z3 626 aaKnown RBP5.39□□□□□ -1.55
LIMA1-203ENST00000547825 CITO14578 2027 aa5.39□□□□□ -1.55
LIMA1-203ENST00000547825 KIAA1549LQ6ZVL6 1849 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 BCLAF3A2AJT9 711 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 HTR3EA5X5Y0 456 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 OR51F1A6NGY5 319 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 A6NL46 340 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FAM25AB3EWG3 89 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FAM25CB3EWG5 89 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FAM25GB3EWG6 89 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 KIAA0355O15063 1070 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 PLOD3O60568 738 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 NBNO60934 754 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 NDUFS2O75306 463 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 PSIP1O75475 530 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 SLC22A3O75751 556 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 BCAS2O75934 225 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CNPP09543 421 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 DHRS4L1P0CG22 281 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 PF4V1P10720 104 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 SLC2A3P11169 496 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 POU2F1P14859 743 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 ARSAP15289 507 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 PORP16435 677 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 UBA1P22314 1058 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TCEA1P23193 301 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 BDNFP23560 247 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 RAB14P61106 215 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 HSDL1Q3SXM5 330 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 WSCD1Q658N2 575 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 KIAA1841Q6NSI8 718 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 EPGNQ6UW88 154 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 KBTBD6Q86V97 674 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 P2RY8Q86VZ1 359 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CPNE9Q8IYJ1 553 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 OR2T12Q8NG77 320 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 KCNN1Q92952 543 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TOP1MTQ969P6 601 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 ASB9Q96DX5 294 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TBATAQ96M53 351 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TSSK3Q96PN8 268 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 PSMG3-AS1Q96PY0 264 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 GAD1Q99259 594 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TRIM54Q9BYV2 358 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 WDR12Q9GZL7 423 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CACYBPQ9HB71 228 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 C14orf119Q9NWQ9 140 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 POLG2Q9UHN1 485 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FBXL7Q9UJT9 491 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 LEF1Q9UJU2 399 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 PSME2Q9UL46 239 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 ANKRD6Q9Y2G4 727 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 WBP11Q9Y2W2 641 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 PTGDR2Q9Y5Y4 395 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 NUP205Q92621 2012 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 PLXNA3P51805 1871 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FAM159BA6NKW6 160 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 UBXN8O00124 270 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CBX4O00257 560 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms