RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 RAB44Q7Z6P3 723 aaPredicted RBP15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 SLC9B2Q86UD5 537 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 C17orf82Q86X59 251 aaPredicted RBP15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 KLHDC8AQ8IYD2 350 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 ARMC2Q8NEN0 867 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 HMGCLL1Q8TB92 370 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 LMX1AQ8TE12 382 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 FBXL8Q96CD0 374 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 TCEAL2Q9H3H9 227 aaPredicted RBP15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 INTS9Q9NV88 658 aaKnown RBP15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 EVA1BQ9NVM1 165 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 ZNF358Q9NW07 568 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 NLGN3Q9NZ94 848 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 ADAMTS9Q9P2N4 1935 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 FAM8A1Q9UBU6 413 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 PDE10AQ9Y233 779 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 STK38LQ9Y2H1 464 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 ST14Q9Y5Y6 855 aa15.61■□□□□ 0.09
PRPF40A-212ENST00000545856 COL5A1P20908 1838 aaPredicted RBP15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 ARHGEF33A8MVX0 844 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 BPGMP07738 259 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 ERGP11308 486 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 GRK2P25098 689 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 RPL10P27635 214 aaKnown RBP15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 IRX4P78413 519 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 SUZ12Q15022 739 aaKnown RBP15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 C6orf132Q5T0Z8 1188 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 LIPMQ5VYY2 423 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 FBXO39Q8N4B4 442 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 OR9A1PQ8NGU1 263 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 ZDHHC1Q8WTX9 485 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 CXorf40BQ96DE9 158 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 INSM2Q96T92 566 aaPredicted RBP15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 TRMOQ9BU70 441 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 ARRDC1-AS1Q9H2J1 176 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 PRDM8Q9NQV8 689 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 OXSMQ9NWU1 459 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 ARL15Q9NXU5 204 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 SIRPGQ9P1W8 387 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 LNPEPQ9UIQ6 1025 aa15.6■□□□□ 0.09
PRPF40A-212ENST00000545856 PCM1Q15154 2024 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 SUPT3HB4E1H0 165 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 G3V2L1 256 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 KLF11O14901 512 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 YY2O15391 372 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 ZW10O43264 779 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 TRIM13O60858 407 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 SUPT3HO75486 399 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 FKBP9O95302 570 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 TOP3BO95985 862 aaKnown RBP15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 LMNAP02545 664 aaKnown RBP15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 MTHFD2P13995 350 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 GFAPP14136 432 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 RAB28P51157 221 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 PGGT1BP53609 377 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 ATXN3P54252 364 aaPredicted RBP15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 UBE2IP63279 158 aaKnown RBP15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 ABRQ12979 859 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 SLC14A1Q13336 389 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 MPP2Q14168 576 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 SETDB1Q15047 1291 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 ZNF542PQ5EBM4 170 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 ZCCHC8Q6NZY4 707 aaKnown RBP15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 NAPRTQ6XQN6 538 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 KANSL1Q7Z3B3 1105 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 TRIM48Q8IWZ4 208 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 SPATA6LQ8N4H0 392 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 FAM181AQ8N9Y4 354 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 FAM46DQ8NEK8 389 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 CCL4L1Q8NHW4 92 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 MAPK15Q8TD08 544 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 SAP25Q8TEE9 199 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 ATOH1Q92858 354 aaPredicted RBP15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 L3HYPDHQ96EM0 354 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 EPB41L1Q9H4G0 881 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 GAREM1Q9H706 876 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 IMP3Q9NV31 184 aaKnown RBP15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 DNAAF2Q9NVR5 837 aaKnown RBP15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 SLC17A7Q9P2U7 560 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 ADAMTS6Q9UKP5 1117 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 WDR37Q9Y2I8 494 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 PLEKHM1Q9Y4G2 1056 aa15.59■□□□□ 0.09
PRPF40A-212ENST00000545856 PROB1E7EW31 1015 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 VIPP01282 170 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 SBK3P0C264 359 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 CHN1P15882 459 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 SHMT2P34897 504 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 GALNT1Q10472 559 aaPredicted RBP15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 KRT33BQ14525 404 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 CLCA4Q14CN2 919 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 PCLAFQ15004 111 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 PCBP2Q15366 365 aaKnown RBP eCLIP15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 PHKG1Q16816 387 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 ANKS6Q68DC2 871 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 C16orf46Q6P387 395 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 RGS9BPQ6ZS82 235 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 LRRC70Q7Z2Q7 622 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 NAGSQ8N159 534 aa15.58■□□□□ 0.08
PRPF40A-212ENST00000545856 CHCHD4Q8N4Q1 142 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms