RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 UGT2B7P16662 529 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 ADRA1AP35348 466 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 KAZNQ674X7 775 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 IGFL2Q6UWQ7 119 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 RANBP10Q6VN20 620 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 PPP4R1Q8TF05 950 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 TFGQ92734 400 aaPredicted RBP17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 N4BP2L2Q92802 583 aaPredicted RBP17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 QKIQ96PU8 341 aaKnown RBP eCLIP17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 AP1M1Q9BXS5 423 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 CHRNA10Q9GZZ6 450 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 SLC6A20Q9NP91 592 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 SLC22A11Q9NSA0 550 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 C5orf60A6NFR6 353 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 IFRD1O00458 451 aaPredicted RBP17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 CCL22O00626 93 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 ZSCAN9O15535 394 aaPredicted RBP17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 TPBGLP0DKB5 382 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 EDN3P14138 238 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 ITGAXP20702 1163 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 ITGA3P26006 1051 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 GCGRP47871 477 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 CDKN1CP49918 316 aaPredicted RBP17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 ZNF140P52738 457 aaPredicted RBP17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 PER3P56645 1201 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 AIMP2Q13155 320 aaKnown RBP17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 CYP2A13Q16696 494 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 NKAIN1Q4KMZ8 207 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 ODF2Q5BJF6 829 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 SP5Q6BEB4 398 aaPredicted RBP17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 DCHS2Q6V1P9 2916 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 UNC5AQ6ZN44 842 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 LUZP1Q86V48 1076 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 ZNF655Q8N720 491 aaPredicted RBP17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 P3H4Q92791 437 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 ULK4Q96C45 1275 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 HAUS1Q96CS2 278 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 COPS8Q99627 209 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 APOL2Q9BQE5 337 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 GBA3Q9H227 469 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 C10orf88Q9H8K7 445 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 SPHK1Q9NYA1 384 aa17.17■□□□□ 0.34
CLSTN3-214ENST00000542663 GOLGA6L22H0YM25 854 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 COMTP21964 271 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 TSFMP43897 325 aaKnown RBP17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 GEMP55040 296 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 TMPRSS15P98073 1019 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 RPA4Q13156 261 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 SNX20Q7Z614 316 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 RHOT2Q8IXI1 618 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 OR5AR1Q8NGP9 310 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 FAR1Q8WVX9 515 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 TXLNGQ9NUQ3 528 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 FBXL4Q9UKA2 621 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 TRHDEQ9UKU6 1024 aa17.16■□□□□ 0.34
CLSTN3-214ENST00000542663 hCG_1818297A0A087WSY0 165 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 TRBV5-4A0A0C4DH59 114 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 CFAP99D6REC4 459 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 SOCS6O14544 535 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 CHRM5P08912 532 aaPredicted RBP17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 PRSS56P0CW18 603 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 ITGALP20701 1170 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 SLC1A1P43005 524 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 PRAMEF13Q5VWM6 474 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 TLDC1Q6P9B6 456 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 HOOK3Q86VS8 718 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 DNAJC22Q8N4W6 341 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 CLDN19Q8N6F1 224 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 DNAJB14Q8TBM8 379 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 HEXDCQ8WVB3 486 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 DNAJC7Q99615 494 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 ZDHHC3Q9NYG2 299 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 C2CD3Q4AC94 2353 aa17.15■□□□□ 0.34
CLSTN3-214ENST00000542663 F8P00451 2351 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 A0A0J9YY10 115 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 CCDC78A2IDD5 438 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 HACD1B0YJ81 288 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 ANXA9O76027 345 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 STSP08842 583 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 MMP11P24347 488 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 ACRV1P26436 265 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 RBL1P28749 1068 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 GRNP28799 593 aaKnown RBP17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 PEBP1P30086 187 aaKnown RBP17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 SHMT2P34897 504 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 ZNF169Q14929 603 aaPredicted RBP17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 TFDP3Q5H9I0 405 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 MCEMP1Q8IX19 187 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 NACC2Q96BF6 587 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 MOCOSQ96EN8 888 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 C19orf43Q9BQ61 176 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 SLX1AQ9BQ83 275 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 SPTLC3Q9NUV7 552 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 IFNKQ9P0W0 207 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 HS3ST3B1Q9Y662 390 aa17.14■□□□□ 0.33
CLSTN3-214ENST00000542663 AKAP9Q99996 3911 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 POLQO75417 2590 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 PRSS44E7EML9 344 aa17.13■□□□□ 0.33
CLSTN3-214ENST00000542663 SPOPO43791 374 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms