RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 RAB28P51157 221 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 GPR143P51810 404 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 TPD52P55327 224 aaPredicted RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 BRWD1-AS2P59051 145 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 ARPC4P59998 168 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 EEF1A1P68104 462 aaKnown RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 SCN1BQ07699 218 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 TROAPQ12815 778 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 TNIP1Q15025 636 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 SYT16Q17RD7 645 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 USH1GQ495M9 461 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 ZNF672Q499Z4 452 aaPredicted RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 LRRC23Q53EV4 343 aaPredicted RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 TMEM35AQ53FP2 167 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 EEF1A1P5Q5VTE0 462 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 C18orf63Q68DL7 685 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 DHRS7BQ6IAN0 325 aaPredicted RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 GFRALQ6UXV0 394 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 ARHGAP22Q7Z5H3 698 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 CAMKMTQ7Z624 323 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 TMEM110Q86TL2 294 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 CCDC190Q86UF4 302 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 SATL1Q86VE3 508 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 TMEM219Q86XT9 240 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 MAP7D3Q8IWC1 876 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.13□□□□□ -1.91
USP28-210ENST00000542033 CEP57L1Q8IYX8 460 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 SCYL3Q8IZE3 742 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 C1orf87Q8N0U7 546 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 CCAR2Q8N163 923 aaKnown RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 NUP93Q8N1F7 819 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 MAB21L3Q8N8X9 362 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 ACVR1CQ8NER5 493 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 BBS10Q8TAM1 723 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 SPATA20Q8TB22 786 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 THAP6Q8TBB0 222 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 LNX1Q8TBB1 728 aaPredicted RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 HM13Q8TCT9 377 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 BRSK1Q8TDC3 778 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 UTP15Q8TED0 518 aaKnown RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 SORCS1Q8WY21 1168 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 MRPS27Q92552 414 aaKnown RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 LPGAT1Q92604 370 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 CD101Q93033 1021 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 RHBDF1Q96CC6 855 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 EPSTI1Q96J88 318 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 C8orf76Q96K31 380 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 FNBP1Q96RU3 617 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 GAD1Q99259 594 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 SEMA3CQ99985 751 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 DESI2Q9BSY9 194 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 THUMPD3Q9BV44 507 aaKnown RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 NUP85Q9BW27 656 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 RTN4RQ9BZR6 473 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 TMEM39BQ9GZU3 492 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 ZSCAN16Q9H4T2 348 aaPredicted RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 LRRC4Q9HBW1 653 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 EPB41L5Q9HCM4 733 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 TMEM30AQ9NV96 361 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 IL17BQ9UHF5 180 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 ICAM5Q9UMF0 924 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 ZNF148Q9UQR1 794 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 WBP11Q9Y2W2 641 aaKnown RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 MRPL11Q9Y3B7 192 aaKnown RBP3.13□□□□□ -1.91
USP28-210ENST00000542033 CCDC171Q6TFL3 1326 aa3.13□□□□□ -1.91
USP28-210ENST00000542033 MAP3K5Q99683 1374 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 MIA2Q96PC5 1412 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 CUX2O14529 1486 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 GOLGA3Q08378 1498 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 CCDC162PA2VCL2 907 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 TMEM221A6NGB7 291 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 C2orf81A6NN90 581 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 MAGEB17A8MXT2 336 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 MAP2K7O14733 419 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 ANKRD28O15084 1053 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 CHUKO15111 745 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 CYTH3O43739 400 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 STX6O43752 255 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 SYNCRIPO60506 623 aaKnown RBP3.12□□□□□ -1.91
USP28-210ENST00000542033 KRT36O76013 467 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 KCNK5O95279 499 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 ICAM1P05362 532 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 F7P08709 466 aaPredicted RBP3.12□□□□□ -1.91
USP28-210ENST00000542033 RPSAP08865 295 aaKnown RBP3.12□□□□□ -1.91
USP28-210ENST00000542033 CETPP11597 493 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 CDH1P12830 882 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 GJA1P17302 382 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 DESP17661 470 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 AMD1P17707 334 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 POLR2CP19387 275 aaPredicted RBP3.12□□□□□ -1.91
USP28-210ENST00000542033 KCNA5P22460 613 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 HOXC13P31276 330 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 GCKP35557 465 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 CCT6AP40227 531 aaKnown RBP3.12□□□□□ -1.91
USP28-210ENST00000542033 APOBEC1P41238 236 aaKnown RBP3.12□□□□□ -1.91
USP28-210ENST00000542033 CCR10P46092 362 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 SUOXP51687 545 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 CCNHP51946 323 aaPredicted RBP3.12□□□□□ -1.91
USP28-210ENST00000542033 CLDN20P56880 219 aa3.12□□□□□ -1.91
USP28-210ENST00000542033 ISL1P61371 349 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms