RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ZNF583Q96ND8 569 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 SUV39H2Q9H5I1 410 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 LRTM1Q9HBL6 345 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 SDK1Q7Z5N4 2213 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 BCKDHAP12694 445 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 EPORP19235 508 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 RFC2P35250 354 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 MTHFRP42898 656 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 CDKN3Q16667 212 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 LRRC23Q53EV4 343 aaPredicted RBP16.53■□□□□ 0.24
USP28-208ENST00000540438 ARSIQ5FYB1 569 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 LY6G5CQ5SRR4 150 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 GPR107Q5VW38 600 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 TMEM215Q68D42 235 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 LCN8Q6JVE9 175 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 OGFOD2Q6N063 350 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 SPESP1Q6UW49 350 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 Q6ZNB5 142 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 HSD11B1LQ7Z5J1 315 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 OR2T12Q8NG77 320 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 FAM162AQ96A26 154 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 PAWRQ96IZ0 340 aaKnown RBP16.53■□□□□ 0.24
USP28-208ENST00000540438 HIC2Q96JB3 615 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 PARVBQ9HBI1 364 aa16.53■□□□□ 0.24
USP28-208ENST00000540438 IFRD1O00458 451 aaPredicted RBP16.52■□□□□ 0.24
USP28-208ENST00000540438 SNUPNO95149 360 aaKnown RBP16.52■□□□□ 0.24
USP28-208ENST00000540438 CPSF4O95639 269 aaKnown RBP16.52■□□□□ 0.24
USP28-208ENST00000540438 ZNF682O95780 498 aa16.52■□□□□ 0.24
USP28-208ENST00000540438 NTRK1P04629 796 aa16.52■□□□□ 0.24
USP28-208ENST00000540438 PGRP06401 933 aa16.52■□□□□ 0.24
USP28-208ENST00000540438 ABCB1P08183 1280 aaPredicted RBP16.52■□□□□ 0.24
USP28-208ENST00000540438 BMP2P12643 396 aa16.52■□□□□ 0.24
USP28-208ENST00000540438 IER5LQ5T953 404 aa16.52■□□□□ 0.24
USP28-208ENST00000540438 OR4F3Q6IEY1 312 aa16.52■□□□□ 0.24
USP28-208ENST00000540438 MSRB3Q8IXL7 192 aa16.52■□□□□ 0.24
USP28-208ENST00000540438 ELMO1Q92556 727 aa16.52■□□□□ 0.24
USP28-208ENST00000540438 BARD1Q99728 777 aaKnown RBP16.52■□□□□ 0.24
USP28-208ENST00000540438 LRRC3Q9BY71 257 aa16.52■□□□□ 0.24
USP28-208ENST00000540438 ELOVL6Q9H5J4 265 aa16.52■□□□□ 0.24
USP28-208ENST00000540438 MANBAO00462 879 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 ANKRD28O15084 1053 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 ZBTB11O95625 1053 aaPredicted RBP16.52■□□□□ 0.23
USP28-208ENST00000540438 HLA-EP13747 358 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 AP1S1P61966 158 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 MEF2AQ02078 507 aaPredicted RBP16.52■□□□□ 0.23
USP28-208ENST00000540438 CYP27C1Q4G0S4 372 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 HACD2Q6Y1H2 254 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 RNF168Q8IYW5 571 aaPredicted RBP16.52■□□□□ 0.23
USP28-208ENST00000540438 STK40Q8N2I9 435 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 OR7A2PQ8NGA2 310 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 FRS2Q8WU20 508 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 TRIM54Q9BYV2 358 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 BRINP2Q9C0B6 783 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 ZNF696Q9H7X3 374 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 PCDH12Q9NPG4 1184 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 ARMC1Q9NVT9 282 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 CXXC1Q9P0U4 656 aaPredicted RBP16.52■□□□□ 0.23
USP28-208ENST00000540438 PCDHB14Q9Y5E9 798 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 CEPT1Q9Y6K0 416 aa16.52■□□□□ 0.23
USP28-208ENST00000540438 K7EPI3 171 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 RPS9P46781 194 aaKnown RBP16.51■□□□□ 0.23
USP28-208ENST00000540438 LSAMPQ13449 338 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 C22orf39Q6P5X5 142 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 ANKFN1Q8N957 763 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 KREMEN2Q8NCW0 462 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 GTF2H4Q92759 462 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 VOPP1Q96AW1 172 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 KIAA1522Q9P206 1035 aaPredicted RBP16.51■□□□□ 0.23
USP28-208ENST00000540438 WASH3PC4AMC7 463 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 PTGES3LE9PB15 166 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 SCAMP1O15126 338 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 LEFTY1O75610 366 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 C1SP09871 688 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 CDH2P19022 906 aaPredicted RBP16.51■□□□□ 0.23
USP28-208ENST00000540438 SHMT2P34897 504 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 GNPDA1P46926 289 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 EMX2Q04743 252 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 GRIN2CQ14957 1233 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 TPGS2Q68CL5 300 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 TMEM179BQ7Z7N9 219 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 DHRSXQ8N5I4 330 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 NUSAP1Q9BXS6 441 aaKnown RBP16.51■□□□□ 0.23
USP28-208ENST00000540438 TRIM15Q9C019 465 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 NTN4Q9HB63 628 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 RIMKLBQ9ULI2 386 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 NEUROG3Q9Y4Z2 214 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 AQP12BA6NM10 295 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 H7C0S8 307 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 MITFO75030 526 aaPredicted RBP16.51■□□□□ 0.23
USP28-208ENST00000540438 PDHA2P29803 388 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 APOFQ13790 326 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 GTF2H3Q13889 308 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 ANGPTL8Q6UXH0 198 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 AQP12AQ8IXF9 295 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 TCEAL8Q8IYN2 117 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 NETO1Q8TDF5 533 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 TCF25Q9BQ70 676 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 RIOK2Q9BVS4 552 aaKnown RBP16.51■□□□□ 0.23
USP28-208ENST00000540438 POLR1BQ9H9Y6 1135 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 CERS4Q9HA82 394 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms