RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 LOC400499M0QZD8 3231 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 CAPN8A6NHC0 703 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 NPIPB15A6NHN6 443 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-208ENST00000537004 TMEM233B4DJY2 109 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 K7ESM1 405 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 TNFSF14O43557 240 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 NIPSNAP2O75323 286 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 VPS26AO75436 327 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 PIAS2O75928 621 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 JUNP05412 331 aaKnown RBP11.7□□□□□ -0.54
CLIP1-208ENST00000537004 PYGLP06737 847 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 GIMD1P0DJR0 217 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 IMPDH1P20839 514 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 LHCGRP22888 699 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 EPHA3P29320 983 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 HNF1BP35680 557 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 POLR2LP62875 67 aaKnown RBP11.7□□□□□ -0.54
CLIP1-208ENST00000537004 CTSL3PQ5NE16 218 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 SH2D4BQ5SQS7 431 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 RPS27LQ71UM5 84 aaKnown RBP11.7□□□□□ -0.54
CLIP1-208ENST00000537004 DPPA4Q7L190 304 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 RAB44Q7Z6P3 723 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-208ENST00000537004 PARGQ86W56 976 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 MCUR1Q96AQ8 359 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 L3HYPDHQ96EM0 354 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 DERL2Q9GZP9 239 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 TFB2MQ9H5Q4 396 aaKnown RBP11.7□□□□□ -0.54
CLIP1-208ENST00000537004 EML4Q9HC35 981 aaKnown RBP11.7□□□□□ -0.54
CLIP1-208ENST00000537004 GALPQ9UBC7 116 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 KNTC1P50748 2209 aa11.7□□□□□ -0.54
CLIP1-208ENST00000537004 TDRD6O60522 2096 aaKnown RBP11.7□□□□□ -0.54
CLIP1-208ENST00000537004 LRRK1Q38SD2 2015 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 C1QTNF9BB2RNN3 333 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 CHUKO15111 745 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 YKT6O15498 198 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 SIGLEC6O43699 453 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 CLDN7O95471 211 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 PRAMEF1O95521 474 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 LDOC1O95751 146 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 CSF2P04141 144 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 C1QTNF9P0C862 333 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 TPBGLP0DKB5 382 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 CD9P21926 228 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 THOP1P52888 689 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ADARP55265 1226 aaKnown RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 HERVK_113P63132 956 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 C1orf61Q13536 156 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 PDCD2Q16342 344 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 CDKN3Q16667 212 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 LSM12Q3MHD2 195 aaKnown RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ZNF678Q5SXM1 525 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 DHRS13Q6UX07 377 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 FAM151BQ6UXP7 276 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 RFLNAQ6ZTI6 216 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ACAD11Q709F0 780 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 RBM15BQ8NDT2 890 aaKnown RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 STON2Q8WXE9 905 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 KIAA1191Q96A73 305 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ATOH8Q96SQ7 321 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 C19orf43Q9BQ61 176 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 C1QTNF7Q9BXJ2 289 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ERVK-6Q9BXR3 956 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 GSTO2Q9H4Y5 243 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 CDYLQ9Y232 598 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 TP53BP1Q12888 1972 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 FAM149AA5PLN7 773 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 UBXN8O00124 270 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 GAPDHSO14556 408 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 SUPT7LO94864 414 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ESR1P03372 595 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 CELA2BP08218 269 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 MTHFD2P13995 350 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 NME1P15531 152 aaKnown RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 JUNDP17535 347 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ETV3P41162 512 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ATP6V0D1P61421 351 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 GALNT1Q10472 559 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ACOX1Q15067 660 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 INAVAQ3KP66 663 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 CERS6Q6ZMG9 384 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 HSD11B1LQ7Z5J1 315 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 CUZD1Q86UP6 607 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 DCP2Q8IU60 420 aaKnown RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 NKAPQ8N5F7 415 aaKnown RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 POU5F2Q8N7G0 328 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 SIDT2Q8NBJ9 832 aaKnown RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ZNF548Q8NEK5 533 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ADAMTS14Q8WXS8 1223 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 KCNJ9Q92806 393 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 TSACCQ96A04 125 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 SLC30A3Q99726 388 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 TRMOQ9BU70 441 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 P2RY12Q9H244 342 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 TRMT6Q9UJA5 497 aaKnown RBP11.69□□□□□ -0.54
CLIP1-208ENST00000537004 COMMD10Q9Y6G5 202 aa11.69□□□□□ -0.54
CLIP1-208ENST00000537004 ANKRD11Q6UB99 2663 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-208ENST00000537004 TRPC5OSA6NMA1 111 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 E5RI56 91 aa11.68□□□□□ -0.54
CLIP1-208ENST00000537004 KERAO60938 352 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms