RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 Q7L0L9 218 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 TRIM46Q7Z4K8 759 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 RETREG3Q86VR2 466 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 HOMEZQ8IX15 550 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 USP7Q93009 1102 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 COX14Q96I36 57 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 HIC2Q96JB3 615 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 ZNF514Q96K75 400 aaPredicted RBP20.2■□□□□ 0.82
VPS28-209ENST00000528142 NECTIN4Q96NY8 510 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 SLC29A3Q9BZD2 475 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 HEBP1Q9NRV9 189 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 SERGEFQ9UGK8 458 aa20.2■□□□□ 0.82
VPS28-209ENST00000528142 MANBAO00462 879 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 NR5A2O00482 541 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 FFAR3O14843 346 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 LIN7AO14910 233 aaPredicted RBP20.19■□□□□ 0.82
VPS28-209ENST00000528142 GPR42O15529 346 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 VEGFDO43915 354 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 ANP32DO95626 131 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 ZNF8P17098 575 aaPredicted RBP20.19■□□□□ 0.82
VPS28-209ENST00000528142 PBLDP30039 288 aaPredicted RBP20.19■□□□□ 0.82
VPS28-209ENST00000528142 MAPK9P45984 424 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 GGTA1PQ4G0N0 100 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 PNCKQ6P2M8 343 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 CACUL1Q86Y37 369 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 FNDC5Q8NAU1 212 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 TSPEARQ8WU66 669 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 FOXJ1Q92949 421 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 PYCR2Q96C36 320 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 TEX37Q96LM6 180 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 C1orf50Q9BV19 199 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 FARSBQ9NSD9 589 aaKnown RBP20.19■□□□□ 0.82
VPS28-209ENST00000528142 TMEM45AQ9NWC5 275 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 MAP10Q9P2G4 905 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 KLQ9UEF7 1012 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 GPR34Q9UPC5 381 aa20.19■□□□□ 0.82
VPS28-209ENST00000528142 KCNE1BA0A087WTH5 132 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 GRXCR2A6NFK2 248 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 ULK1O75385 1050 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 MAP4P27816 1152 aaKnown RBP20.18■□□□□ 0.82
VPS28-209ENST00000528142 GCKP35557 465 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 PFN3P60673 137 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 RPS14P62263 151 aaKnown RBP20.18■□□□□ 0.82
VPS28-209ENST00000528142 NR6A1Q15406 480 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 AAK1Q2M2I8 961 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 VPS26BQ4G0F5 336 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 KIAA1211LQ6NV74 962 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 TRAPPC5Q8IUR0 188 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 HDDC3Q8N4P3 179 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 L3MBTL4Q8NA19 623 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 GABRG3Q99928 467 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 ATG10Q9H0Y0 220 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 ACTR8Q9H981 624 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 DNAJC11Q9NVH1 559 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 SLC22A14Q9Y267 594 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 NDUFAF1Q9Y375 327 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 C17orf113A0A1B0GUU1 675 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 A0A1W2PP55 124 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 SLC28A1O00337 649 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 PRAMEF4O60810 478 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 CATP04040 527 aaKnown RBP20.18■□□□□ 0.82
VPS28-209ENST00000528142 CTHP32929 405 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 ERFP50548 548 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 UFM1P61960 85 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 SLC34A1Q06495 639 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 GTF2H3Q13889 308 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 AGERQ15109 404 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 WSCD2Q2TBF2 565 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 AP5B1Q2VPB7 878 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 CCSMST1Q4G0I0 132 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 RFTN2Q52LD8 501 aaPredicted RBP20.18■□□□□ 0.82
VPS28-209ENST00000528142 WLSQ5T9L3 541 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 PRAMEF9Q5VWM5 478 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 ZNF776Q68DI1 518 aaPredicted RBP20.18■□□□□ 0.82
VPS28-209ENST00000528142 AAGABQ6PD74 315 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 KLHDC8AQ8IYD2 350 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 CFAP206Q8IYR0 622 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 OR2T3Q8NH03 318 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 JADE3Q92613 823 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 ROPN1LQ96C74 230 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 SLC45A3Q96JT2 553 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 PPP3R2Q96LZ3 170 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 CCDC138Q96M89 665 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 ZIM2Q9NZV7 527 aa20.18■□□□□ 0.82
VPS28-209ENST00000528142 C9JVG2 144 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 E7ENX8 843 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 H3BM21 787 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 RGS14O43566 566 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 FKBP6O75344 327 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 SLC22A3O75751 556 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 POP7O75817 140 aaKnown RBP20.17■□□□□ 0.82
VPS28-209ENST00000528142 RCAN2Q14206 197 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 CCDC85BQ15834 202 aaPredicted RBP20.17■□□□□ 0.82
VPS28-209ENST00000528142 CCDC6Q16204 474 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 SMU1Q2TAY7 513 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 COQ5Q5HYK3 327 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 TMEM196Q5HYL7 178 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 C11orf96Q7Z7L8 435 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 ZNHIT2Q9UHR6 403 aa20.17■□□□□ 0.82
VPS28-209ENST00000528142 ZNF490Q9ULM2 529 aaPredicted RBP20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms