RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CLIC1O00299 241 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 AP2A2O94973 939 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 IQCF3P0C7M6 154 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 DGKEP52429 567 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 SRSF11Q05519 484 aaKnown RBP12.44□□□□□ -0.42
USP53-209ENST00000514665 ZNHIT3Q15649 155 aaPredicted RBP12.44□□□□□ -0.42
USP53-209ENST00000514665 TMEM135Q86UB9 458 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 CEP97Q8IW35 865 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 C2CD4AQ8NCU7 369 aaPredicted RBP12.44□□□□□ -0.42
USP53-209ENST00000514665 RAB2BQ8WUD1 216 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 ADAMTS6Q9UKP5 1117 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 RGPD5Q99666 1765 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 PER2O15055 1255 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 SNX4O95219 450 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 ADH1CP00326 375 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 HOXB6P17509 224 aaKnown RBP12.44□□□□□ -0.42
USP53-209ENST00000514665 ZDHHC20Q5W0Z9 365 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 MZT2AQ6P582 158 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 KRT74Q7RTS7 529 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 SVOPLQ8N434 492 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 NPWQ8N729 165 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 POMGNT2Q8NAT1 580 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 SLITRK2Q9H156 845 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 SOX17Q9H6I2 414 aaPredicted RBP12.44□□□□□ -0.42
USP53-209ENST00000514665 C3orf14Q9HBI5 128 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 TBC1D14Q9P2M4 693 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 LCHNA4D1U4 455 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 TBX1O43435 398 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 CREMQ03060 361 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 RFTN1Q14699 578 aaPredicted RBP12.44□□□□□ -0.42
USP53-209ENST00000514665 DCST1Q5T197 706 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 PLET1Q6UQ28 207 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 ZNF730Q6ZMV8 503 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 ASRGL1Q7L266 308 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 SMG7Q92540 1137 aaKnown RBP12.44□□□□□ -0.42
USP53-209ENST00000514665 KIAA1191Q96A73 305 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 BIRC7Q96CA5 298 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 ZNF599Q96NL3 588 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 COQ7Q99807 217 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 KAT8Q9H7Z6 458 aaKnown RBP12.44□□□□□ -0.42
USP53-209ENST00000514665 TMEM165Q9HC07 324 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 C11orf16Q9NQ32 467 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 PTGDR2Q9Y5Y4 395 aa12.44□□□□□ -0.42
USP53-209ENST00000514665 KIAA0100Q14667 2235 aaKnown RBP12.43□□□□□ -0.42
USP53-209ENST00000514665 DCLK1O15075 740 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 FKTNO75072 461 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 C8GP07360 202 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 C4BPBP20851 252 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 CLDN10P78369 228 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 CCNIQ14094 377 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 HKDC1Q2TB90 917 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 ERMP1Q7Z2K6 904 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 ZNF280BQ86YH2 543 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 UBE2J2Q8N2K1 259 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 TRIM63Q969Q1 353 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 TP53INP1Q96A56 240 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 ACDQ96AP0 544 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 SLC27A6Q9Y2P4 619 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 WBP11Q9Y2W2 641 aaKnown RBP12.43□□□□□ -0.42
USP53-209ENST00000514665 C5P01031 1676 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 IGKV6-21A0A0C4DH24 114 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 A0A1W2PPW3 197 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 AXIN1O15169 862 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 OR1F1O43749 312 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 ERN1O75460 977 aaKnown RBP12.43□□□□□ -0.42
USP53-209ENST00000514665 PSIP1O75475 530 aaKnown RBP12.43□□□□□ -0.42
USP53-209ENST00000514665 RNASEH2AO75792 299 aaKnown RBP12.43□□□□□ -0.42
USP53-209ENST00000514665 TGFB1P01137 390 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 CDH1P12830 882 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 EDNRBP24530 442 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 HTR1BP28222 390 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 PSMD8P48556 350 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 EIF2B5Q13144 721 aaKnown RBP12.43□□□□□ -0.42
USP53-209ENST00000514665 ZNF678Q5SXM1 525 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 CMTM8Q8IZV2 173 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 ARFGAP1Q8N6T3 406 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 OR5K1Q8NHB7 308 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 SUV39H2Q9H5I1 410 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 SCML2Q9UQR0 700 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 YIPF1Q9Y548 306 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 FAM240BA0A1B0GVZ2 78 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 CCNKO75909 580 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 FAM163BP0C2L3 166 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 T-ENOLP0DO92 83 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 GKP32189 559 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 CCT3P49368 545 aaKnown RBP12.43□□□□□ -0.42
USP53-209ENST00000514665 RGS8P57771 180 aaPredicted RBP12.43□□□□□ -0.42
USP53-209ENST00000514665 SKP1P63208 163 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 TGFBIQ15582 683 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 IFI44LQ53G44 452 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 PSRC1Q6PGN9 363 aaPredicted RBP12.43□□□□□ -0.42
USP53-209ENST00000514665 AGMOQ6ZNB7 445 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 SOHLH2Q9NX45 425 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 NKIRAS2Q9NYR9 191 aa12.43□□□□□ -0.42
USP53-209ENST00000514665 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 BHMG1C9JSJ3 638 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 EDN1P05305 212 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 PGRP06401 933 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 HOXA11P31270 313 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 RYKP34925 604 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms