RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 IRF9Q00978 393 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 CFHR1Q03591 330 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 GRB7Q14451 532 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 NR1D2Q14995 579 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 SNAP47Q5SQN1 464 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 EMBQ6PCB8 327 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 MBOAT1Q6ZNC8 495 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 RAPH1Q70E73 1250 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 B3GNT8Q7Z7M8 397 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 DCUN1D3Q8IWE4 304 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 MYO1HQ8N1T3 1032 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 DLG3Q92796 817 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 CAVIN3Q969G5 261 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 ABCG4Q9H172 646 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 KIR3DX1Q9H7L2 352 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 GPAMQ9HCL2 828 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 SNX15Q9NRS6 342 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 TBK1Q9UHD2 729 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 APOBEC2Q9Y235 224 aaKnown RBP9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 PCDHGA1Q9Y5H4 931 aa9.53□□□□□ -0.88
TOPBP1-209ENST00000513818 SPTBN2O15020 2390 aa9.52□□□□□ -0.88
TOPBP1-209ENST00000513818 PTPRBP23467 1997 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 PMS2P1A4D2B8 440 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 OR6C74A6NCV1 312 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 TRIM49D1C9J1S8 452 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 BTN3A3O00478 584 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 BTN3A1O00481 513 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 DUX1O43812 170 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 UBXN7O94888 489 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 DKK1O94907 266 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 WISP3O95389 354 aaPredicted RBP9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 C1orf105O95561 183 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 ALDOAP04075 364 aaKnown RBP9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 GP1BAP07359 652 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 SLC35E2BP0CK96 405 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 MPC1LP0DKB6 136 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 STMN1P16949 149 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 AMD1P17707 334 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 POLR2CP19387 275 aaPredicted RBP9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 NDUFS1P28331 727 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 ATP5DP30049 168 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 CAPZBP47756 277 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 RGS4P49798 205 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 RAB10P61026 200 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 PLOD1Q02809 727 aaPredicted RBP9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 ILKQ13418 452 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 SPIDRQ14159 915 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 ZKSCAN8Q15776 578 aaPredicted RBP9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 UGT3A1Q6NUS8 523 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 IRGCQ6NXR0 463 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 FBXO38Q6PIJ6 1188 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 UNC5DQ6UXZ4 953 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 CYHR1Q6ZMK1 362 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 FAM92BQ6ZTR7 304 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 UBE2R2Q712K3 238 aaPredicted RBP9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 TRIM73Q86UV7 250 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 FAM20CQ8IXL6 584 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 OR4E2Q8NGC2 313 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 OR6C4Q8NGE1 309 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 OR5K2Q8NHB8 316 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 NCSTNQ92542 709 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 EXT2Q93063 718 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 SH3KBP1Q96B97 665 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 TSPAN17Q96FV3 270 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 AHCYL2Q96HN2 611 aaKnown RBP9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 PPM1MQ96MI6 270 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 TGM7Q96PF1 710 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 GFM1Q96RP9 751 aaKnown RBP9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 DHRS4Q9BTZ2 278 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 SEMA6CQ9H3T2 930 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 MVB12BQ9H7P6 319 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 HEBP2Q9Y5Z4 205 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 IKBKGQ9Y6K9 419 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 COLEC10Q9Y6Z7 277 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 ADAMTS20P59510 1910 aa9.52□□□□□ -0.89
TOPBP1-209ENST00000513818 GSAPA4D1B5 854 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 A8MU76 341 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 CDC7O00311 574 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 NTN3O00634 580 aaPredicted RBP9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 CSO75390 466 aaKnown RBP9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 PSIP1O75475 530 aaKnown RBP9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 MATN4O95460 622 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 ENO3P13929 434 aaPredicted RBP9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 PNLIPP16233 465 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 PEBP1P30086 187 aaKnown RBP9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 PKLRP30613 574 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 GPR3P46089 330 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 SERPINB8P50452 374 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 EPHA4P54764 986 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 IL2P60568 153 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 POU4F1Q01851 419 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 DLG1Q12959 904 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 TSTA3Q13630 321 aaPredicted RBP9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 FASTKQ14296 549 aaKnown RBP9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 CSHL1Q14406 222 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 TSNQ15631 228 aaKnown RBP9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 PHKG1Q16816 387 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 PHF19Q5T6S3 580 aa9.51□□□□□ -0.89
TOPBP1-209ENST00000513818 TBC1D21Q8IYX1 336 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms