RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 COPG1Q9Y678 874 aaKnown RBP20.34■□□□□ 0.85
SQSTM1-210ENST00000506042 USP9YO00507 2555 aaPredicted RBP20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 IGLV3-16A0A075B6K0 115 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 A0A0J9YY10 115 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 CCDC78A2IDD5 438 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 H7C0S8 307 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 SEMA7AO75326 666 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 PRKG2Q13237 762 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 ITIH4Q14624 930 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 KIR2DS3Q14952 304 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 PRAMEF17Q5VTA0 474 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 IGFL3Q6UXB1 125 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 RBMXL3Q8N7X1 1067 aaKnown RBP20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 PHC3Q8NDX5 983 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 STYXQ8WUJ0 223 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 ELMO1Q92556 727 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 OSBPL8Q9BZF1 889 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 FAM96AQ9H5X1 160 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 SMARCAL1Q9NZC9 954 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 PLCL2Q9UPR0 1127 aa20.33■□□□□ 0.85
SQSTM1-210ENST00000506042 A1L4Q6 167 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 ANKUB1A6NFN9 424 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 DDX3YO15523 660 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 SGTAO43765 313 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 CAPN1P07384 714 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 PTPN7P35236 360 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 RWDD2BP57060 319 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 AIMP2Q13155 320 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 MRPL49Q13405 166 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 RAPSNQ13702 412 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 NR6A1Q15406 480 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 ZNF789Q5FWF6 425 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 LINC00523Q86TU6 105 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 ADGRF3Q8IZF5 1079 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 MRFAP1L1Q96HT8 127 aa20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 NLE1Q9NVX2 485 aaPredicted RBP20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 TDRKHQ9Y2W6 561 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-210ENST00000506042 TRBV5-4A0A0C4DH59 114 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 ISM1B1AKI9 464 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 PJA2O43164 708 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 AP2A1O95782 977 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 PVRP15151 417 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 UGT2B7P16662 529 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 CA5AP35218 305 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 CTNNA1P35221 906 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 SLC5A12Q1EHB4 618 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 PARP6Q2NL67 630 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 YOD1Q5VVQ6 348 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 LCN10Q6JVE6 187 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 TTC23LQ6PF05 361 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 RAB42Q8N4Z0 105 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 LILRA3Q8N6C8 439 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 Q8NA96 180 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 GSDMBQ8TAX9 411 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 SNRNP40Q96DI7 357 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 KLHL25Q9H0H3 589 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 MRM3Q9HC36 420 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 P4HTMQ9NXG6 502 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 NXT1Q9UKK6 140 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 PCDHA3Q9Y5H8 950 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 MRFAP1Q9Y605 127 aa20.31■□□□□ 0.84
SQSTM1-210ENST00000506042 SPTBN1Q01082 2364 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 RP1L1Q8IWN7 2480 aaPredicted RBP20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 CHRM5P08912 532 aaPredicted RBP20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 GLRBP48167 497 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 NKAIN1Q4KMZ8 207 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 ZC3H12BQ5HYM0 836 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 C1orf189Q5VU69 101 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 TXLNBQ8N3L3 684 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 CISD2Q8N5K1 135 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 OR5K2Q8NHB8 316 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 CCDC110Q8TBZ0 833 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 FKBP10Q96AY3 582 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 DNAJC1Q96KC8 554 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 XKR8Q9H6D3 395 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 EPS8L2Q9H6S3 715 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 RUBCNLQ9H714 662 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 IL1RAPL1Q9NZN1 696 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 ICKQ9UPZ9 632 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 PCDHA13Q9Y5I0 950 aa20.3■□□□□ 0.84
SQSTM1-210ENST00000506042 AGPSO00116 658 aa20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 KLF7O75840 302 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 ITGA3P26006 1051 aa20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 PDHA2P29803 388 aa20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 SOX8P57073 446 aa20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 NAA30Q147X3 362 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 PLEKHN1Q494U1 663 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 PRR30Q53SZ7 412 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 ZNF385CQ66K41 422 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 UNC5AQ6ZN44 842 aa20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 SLC34A3Q8N130 599 aa20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 ZNF655Q8N720 491 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 UBL4BQ8N7F7 174 aa20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 GBP5Q96PP8 586 aa20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 RAB11FIP5Q9BXF6 653 aa20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 TSPY26PQ9H489 355 aa20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 ASF1BQ9NVP2 202 aa20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-210ENST00000506042 FKBP9O95302 570 aa20.28■□□□□ 0.84
SQSTM1-210ENST00000506042 ALBP02768 609 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms