RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 HPGDP15428 266 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 VIPR1P32241 457 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 GMPRP36959 345 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 GRIK2Q13002 908 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 PIGGQ5H8A4 983 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 TRIQKQ629K1 86 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 SLC30A8Q8IWU4 369 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 MARVELD2Q8N4S9 558 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 IGFLR1Q9H665 355 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 FLRT1Q9NZU1 646 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 IRGMA1A4Y4 181 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 FAM25AB3EWG3 89 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 FAM25CB3EWG5 89 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 FAM25GB3EWG6 89 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 MPZL2O60487 215 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 UGT2B17O75795 530 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 NADKO95544 446 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 LATS1O95835 1130 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 ZBED5Q49AG3 693 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 FRG2Q64ET8 278 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 CNTN4Q8IWV2 1026 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 GIPC3Q8TF64 312 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 TMBIM1Q969X1 311 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 UTP4Q969X6 686 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 BIRC7Q96CA5 298 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 FRG2BQ96QU4 278 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF347Q96SE7 839 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 PCBD2Q9H0N5 130 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 VPS29Q9UBQ0 182 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 CNOT11Q9UKZ1 510 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 ADAMTSL1Q8N6G6 1762 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 PDLIM1O00151 329 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 SRPRAP08240 638 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 MYCLP1P12525 358 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 GLDCP23378 1020 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 NOS3P29474 1203 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 CTSKP43235 329 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 GATMP50440 423 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 CEACAM7Q14002 265 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 COQ5Q5HYK3 327 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 DGKKQ5KSL6 1271 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 SCD5Q86SK9 330 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 GOLM1Q8NBJ4 401 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 MZB1Q8WU39 189 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 CXorf40BQ96DE9 158 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF514Q96K75 400 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 ACAT2Q9BWD1 397 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 TRIT1Q9H3H1 467 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 PHPT1Q9NRX4 125 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 STMN3Q9NZ72 180 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 OGDHLQ9ULD0 1010 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 CDK5RAP2Q96SN8 1893 aa10.55□□□□□ -0.72
LIMCH1-205ENST00000503057 KRT87PA6NCN2 255 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 LOC730098B7Z3J9 87 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 NOBOXO60393 691 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ALOX5P09917 674 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 SSR2P43308 183 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 AGTR2P50052 363 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 DGKQP52824 942 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 SPIN4Q56A73 249 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 LRRC66Q68CR7 880 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 LUZP2Q86TE4 346 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 MINDY1Q8N5J2 469 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ZMIZ2Q8NF64 920 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 GPR150Q8NGU9 434 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 RASSF5Q8WWW0 418 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 TRPS1Q9UHF7 1281 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 OARD1Q9Y530 152 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF780BQ9Y6R6 833 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 QSER1Q2KHR3 1735 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 hCG_2039718K7EN88 272 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 CACNB4O00305 520 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ZW10O43264 779 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 GRID2O43424 1007 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 GJB5O95377 273 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 IFNW1P05000 195 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 DBTP11182 482 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 RFC2P35250 354 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 PSMD8P48556 350 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 SKIV2LQ15477 1246 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 KCTD21Q4G0X4 260 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 USP39Q53GS9 565 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 TRAF7Q6Q0C0 670 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 KDELC1Q6UW63 502 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 OR52L1Q8NGH7 329 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 TEX47Q8TBZ9 253 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 NACC2Q96BF6 587 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 IGSF21Q96ID5 467 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 RASSF1Q9NS23 344 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 EHD3Q9NZN3 535 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 MAP4K5Q9Y4K4 846 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 LINC00854A0A1B0GVQ3 168 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 H0Y858 1186 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 EEDO75530 441 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 ARSDP51689 593 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 NFATC2Q13469 925 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 MYBPC3Q14896 1274 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 DUOXA1Q1HG43 343 aa10.54□□□□□ -0.72
LIMCH1-205ENST00000503057 IFI44LQ53G44 452 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms